Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS01840 and HSERO_RS01845 overlap by 2 nucleotidesHSERO_RS01845 and HSERO_RS01850 are separated by 381 nucleotidesHSERO_RS01850 and HSERO_RS01855 are separated by 322 nucleotidesHSERO_RS01855 and HSERO_RS01860 are separated by 19 nucleotides HSERO_RS01840: HSERO_RS01840 - hypothetical protein, at 405,313 to 405,543 _RS01840 HSERO_RS01845: HSERO_RS01845 - hypothetical protein, at 405,542 to 405,844 _RS01845 HSERO_RS01850: HSERO_RS01850 - signal recognition particle protein, at 406,226 to 407,596 _RS01850 HSERO_RS01855: HSERO_RS01855 - myristoyl transferase, at 407,919 to 408,878 _RS01855 HSERO_RS01860: HSERO_RS01860 - sulfonate ABC transporter permease, at 408,898 to 409,719 _RS01860
Group Condition HSERO_RS01840 HSERO_RS01845 HSERO_RS01850 HSERO_RS01855 HSERO_RS01860
stress Fusidic 0.025 mg/ml N.D. N.D. N.D. -0.5 -0.4
carbon source D,L-Lactate (C) N.D. N.D. N.D. -0.2 -0.7
stress Lomefloxacin 0.012 mM N.D. N.D. N.D. -0.5 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.4 -0.3
stress Nickel (II) chloride 0.6 mM N.D. N.D. N.D. -0.6 -0.1
carbon source D-Mannose (C) N.D. N.D. N.D. -0.0 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -0.4 -0.2
carbon source D,L-Lactate (C) N.D. N.D. N.D. -0.2 -0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. N.D. -0.0 -0.6
carbon source D-Ribose (C) N.D. N.D. N.D. -0.3 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -0.1 -0.4
stress sodium fluoride 100 mM N.D. N.D. N.D. +0.1 -0.7
stress Sisomicin 0.125 mg/ml N.D. N.D. N.D. -0.5 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -0.5 +0.1
carbon source L-Rhamnose (C) N.D. N.D. N.D. +0.3 -0.6
carbon source L-Rhamnose (C) N.D. N.D. N.D. +0.4 -0.4
carbon source D-Galactose (C) N.D. N.D. N.D. +0.4 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. -0.4 +0.4
nitrogen source L-Glutamic (N); low aeration N.D. N.D. N.D. +0.4 -0.4
nitrogen source Ammonium chloride (N); low aeration N.D. N.D. N.D. +0.4 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -0.2 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -0.4 +0.6
carbon source L-mannose (C) N.D. N.D. N.D. +0.5 -0.2
carbon source D-Glucose (C) N.D. N.D. N.D. +0.7 -0.2
carbon source D-Ribose (C) N.D. N.D. N.D. +0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. +0.2 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +0.5 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +0.2 +0.6
control NoPredeControl N.D. N.D. N.D. +0.5 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. +0.2 +1.3
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