Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS01805 and HSERO_RS01810 are separated by 203 nucleotidesHSERO_RS01810 and HSERO_RS01815 are separated by 116 nucleotidesHSERO_RS01815 and HSERO_RS01820 are separated by 87 nucleotidesHSERO_RS01820 and HSERO_RS01825 are separated by 5 nucleotides HSERO_RS01805: HSERO_RS01805 - 50S ribosomal protein L27, at 398,440 to 398,697 _RS01805 HSERO_RS01810: HSERO_RS01810 - GTPase CgtA, at 398,901 to 400,010 _RS01810 HSERO_RS01815: HSERO_RS01815 - gamma-glutamyl kinase, at 400,127 to 401,245 _RS01815 HSERO_RS01820: HSERO_RS01820 - hypothetical protein, at 401,333 to 401,911 _RS01820 HSERO_RS01825: HSERO_RS01825 - RNA pyrophosphohydrolase, at 401,917 to 402,501 _RS01825
Group Condition HSERO_RS01805 HSERO_RS01810 HSERO_RS01815 HSERO_RS01820 HSERO_RS01825
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. -5.0 -0.3 -3.6
vitamin No vitamins t2 N.D. N.D. -5.0 -0.0 -2.7
carbon source L-Malic (C) N.D. N.D. -7.9 -0.1 +0.4
carbon source pyruvate (C) N.D. N.D. -7.1 -0.0 -0.0
carbon source L-Arabinose (C) N.D. N.D. -7.3 -0.2 +0.5
carbon source D-Mannose (C) N.D. N.D. -6.6 -0.3 +0.0
nutrient Min media with glucose N.D. N.D. -5.9 -0.0 -1.0
nutrient L-Serine N.D. N.D. -6.3 -0.1 -0.5
nutrient L-Histidine N.D. N.D. -5.7 +0.0 -0.9
carbon source L-Glutamine (C) N.D. N.D. -6.3 +0.1 -0.4
carbon source succinate (C) N.D. N.D. -7.5 +0.2 +1.0
carbon source a-Ketoglutaric (C) N.D. N.D. -7.0 -0.2 +1.1
carbon source D-Galacturonic Acid (C) N.D. N.D. -6.3 +0.2 +0.8
carbon source m-Inositol (C) N.D. N.D. -6.5 +0.0 +1.5
carbon source D-Sorbitol (C) N.D. N.D. -7.3 +0.1 +2.2
carbon source a-Ketoglutaric (C) N.D. N.D. -5.7 +0.1 +1.3
carbon source D-Galacturonic Acid (C) N.D. N.D. -5.7 +0.2 +1.2
carbon source m-Inositol (C) N.D. N.D. -5.5 +0.0 +1.3
carbon source D-Glucose-6-Phosphate (C) N.D. N.D. -6.1 +0.3 +1.7
carbon source D-Lactate (C) N.D. N.D. -6.3 +0.4 +1.9
carbon source Xylitol (C) N.D. N.D. -6.6 +0.3 +3.0
carbon source L-Fucose (C) N.D. N.D. -5.2 -0.1 +2.2
carbon source D-Lactate (C) N.D. N.D. -5.1 +0.3 +1.7
carbon source Xylitol (C) N.D. N.D. -5.6 +0.2 +2.4
carbon source L-Lactate (C) N.D. N.D. -5.0 -0.0 +2.6
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days N.D. N.D. -5.7 +0.1 +3.2
carbon source D-Ribose (C) N.D. N.D. -4.7 +0.2 +2.7
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days N.D. N.D. -5.6 +0.2 +3.8
carbon source D-Ribose (C) N.D. N.D. -5.0 +0.5 +2.9
carbon source L-Lactate (C) N.D. N.D. -4.1 +0.5 +3.1
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