Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS01770 and HSERO_RS01775 are separated by 166 nucleotidesHSERO_RS01775 and HSERO_RS01780 are separated by 428 nucleotidesHSERO_RS01780 and HSERO_RS01785 are separated by 109 nucleotidesHSERO_RS01785 and HSERO_RS01790 are separated by 143 nucleotides HSERO_RS01770: HSERO_RS01770 - general secretion pathway protein GspE, at 392,892 to 394,022 _RS01770 HSERO_RS01775: HSERO_RS01775 - hypothetical protein, at 394,189 to 395,493 _RS01775 HSERO_RS01780: HSERO_RS01780 - translation initiation factor IF-1, at 395,922 to 396,185 _RS01780 HSERO_RS01785: HSERO_RS01785 - hypothetical protein, at 396,295 to 396,546 _RS01785 HSERO_RS01790: HSERO_RS01790 - tRNA-Pro, at 396,690 to 396,766 _RS01790
Group Condition HSERO_RS01770 HSERO_RS01775 HSERO_RS01780 HSERO_RS01785 HSERO_RS01790
carbon source L-Arabinose (C) +0.2 -0.2 -2.6 -1.3 N.D.
carbon source D-Gluconic Acid (C) -0.2 +0.0 -1.3 -1.7 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.0 +0.3 -2.6 -0.6 N.D.
nutrient L-Histidine +0.0 -0.0 -2.2 -0.3 N.D.
carbon source D-Glucose (C) +0.5 +0.2 -2.3 -0.4 N.D.
carbon source Glycerol (C) +0.4 -0.0 -2.0 -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.6 -1.3 -0.1 N.D.
carbon source D-Galactose (C) -0.1 +0.1 -1.3 -0.6 N.D.
carbon source m-Inositol (C) +0.1 +0.3 -1.5 -0.7 N.D.
carbon source D-Gluconic Acid (C) +0.4 +0.6 -1.6 -1.0 N.D.
carbon source D-Lactate (C) -0.1 +0.4 -1.6 -0.2 N.D.
carbon source D-Galactose (C) +0.3 +0.2 -1.7 -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.2 -1.2 +0.4 N.D.
carbon source L-Asparagine (C) +0.3 +0.1 -1.2 -0.5 N.D.
carbon source pyruvate (C) +0.3 +0.4 -0.9 -0.9 N.D.
stress Lomefloxacin 0.012 mM +0.0 +0.2 +0.5 -1.9 N.D.
carbon source L-Lactate (C) +0.3 +0.4 -1.2 -0.5 N.D.
carbon source L-Malic (C) +0.4 +0.4 -0.5 -1.1 N.D.
agar plate interaction control Taped volatile agar plate with no fungus +0.2 +0.2 +0.6 -1.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 -0.1 -1.1 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -0.2 -1.0 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.2 -0.8 +1.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -0.3 -0.2 +1.2 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +0.5 -1.6 +1.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 -0.6 +0.1 +0.8 N.D.
stress Cobalt chloride 0.2 mM +0.3 +1.0 -0.5 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.0 -0.2 +1.0 -0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 -0.1 -0.6 +2.6 N.D.
stress Nickel (II) chloride 0.6 mM +0.4 +1.3 +0.0 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 -0.2 +1.7 +0.8 N.D.
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