Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS01480	HSERO_RS01485	HSERO_RS01490	HSERO_RS01495	HSERO_RS01500
plant	Control soil assay; outgrowth in LB	-0.3	-0.2	+0.0	-0.3	-1.0
carbon source	D,L-Lactate (C)	-0.2	-0.0	-0.3	+0.2	-1.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.3	+0.3	-0.3	-2.3
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	-0.0	+0.1	+0.1	-0.2	-1.3
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	-0.2	+0.0	+0.3	-0.1	-1.2
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	-0.1	-0.1	+0.6	-0.1	-1.6
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	-0.0	+0.2	+0.2	-0.0	-1.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.1	+0.3	-0.5	-0.4	+0.5
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	-0.3	-0.2	+0.6	+0.3	-0.4
carbon source	D-Glucose (C)	-0.4	-0.3	+0.6	-0.2	+0.4
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	-0.2	-0.0	+1.4	+0.1	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.0	-0.0	+0.1	+0.2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	+0.3	+0.5	+0.1	-0.5
carbon source	D-Glucose-6-Phosphate (C)	-0.2	+0.1	+0.2	-0.3	+1.1
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	-0.1	-0.1	+1.4	+0.2	-0.6
carbon source	D-Xylose (C)	-0.1	-0.1	+0.2	-0.2	+1.3
carbon source	D-Lactate (C)	+0.1	-0.3	+0.4	-0.1	+0.9
stress	sodium fluoride 100 mM	+0.5	+0.1	-0.5	+0.2	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.4	-0.0	+0.7	-0.3
carbon source	Xylitol (C)	+0.3	+0.0	+0.1	-0.5	+1.4
carbon source	D-Ribose (C)	-0.3	+0.0	+0.5	-0.0	+1.1
carbon source	D-Sorbitol (C)	-0.1	-0.2	+0.3	-0.2	+1.5
carbon source	D-Glucose-6-Phosphate (C)	-0.2	+0.2	+0.5	-0.2	+1.1
carbon source	D-Glucose (C)	-0.1	-0.1	+0.7	-0.3	+1.3
micoeukaryotes	Dictyostellum sp.mixed culture-2	-0.2	-0.4	+1.2	+0.3	+0.5
carbon source	L-Fucose (C)	+0.3	-0.2	+0.3	+0.1	+1.1
carbon source	D-Lactate (C)	+0.5	+0.2	+0.3	-0.1	+0.8
micoeukaryotes	Dictyostellum sp.mixed culture-1	+0.0	-0.2	+0.9	+0.3	+0.7
carbon source	L-Arabinose (C)	+0.1	+0.1	+0.5	+0.3	+0.7
carbon source	L-Fucose (C)	+0.3	+0.2	+0.3	+0.1	+1.2