Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS01275	HSERO_RS01280	HSERO_RS01285	HSERO_RS01290	HSERO_RS01295
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.1	+0.2	-0.9	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.7	+0.2	-0.1	+0.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	-0.2	+0.4	-0.3	+0.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.0	+0.1	-0.1	-0.9	+0.7
micoeukaryotes	C.elegans, mixed culture-2	-0.2	-0.3	-0.0	-0.5	+0.7
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.1	+0.3	+0.1	-0.8	+0.1
carbon source	D-Lactate (C)	-0.5	-0.5	+0.2	+0.8	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+0.4	-0.4	+0.6	-0.0
carbon source	D-Xylose (C)	-0.7	+0.2	+0.1	+0.9	-0.1
micoeukaryotes	Acanthamoeba sp., muxed culture-1	+0.5	-0.1	+0.2	-0.4	+0.5
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.1	+0.1	-0.3	-0.4	+1.3
vitamin	With vitamins t2	+0.5	+0.0	-0.0	-0.4	+0.6
control	NoPredeControl	+0.1	-0.1	+0.1	-0.3	+1.0
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.1	-0.4	-0.2	-0.1	+1.6
vitamin	No vitamins t2	+0.1	+0.3	+0.2	-0.6	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.2	+0.4	+0.5	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.2	+0.2	+0.8	+0.3
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 3 days	+0.2	+0.1	+0.0	-1.0	+2.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.1	+0.0	+1.2	+0.3
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 3 days	+0.2	+0.1	+0.0	-0.5	+2.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	-0.1	+0.1	+1.7	-0.1
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	+0.2	+0.1	+0.2	+0.2	+1.5
nitrogen fixation	L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days	+0.1	-0.1	+0.0	-0.4	+2.9
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.1	+0.6	+0.1	+0.8	+1.1
nitrogen fixation	L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days	+0.2	+0.0	+0.3	-0.7	+3.3
nitrogen fixation	D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days	+0.2	+0.1	+0.1	+0.0	+3.1
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	-0.0	-0.1	+0.0	-1.0	+5.2
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	+0.1	+0.3	+0.1	-1.1	+4.7
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	+0.0	+0.1	+0.1	+0.1	+4.3
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	+0.2	+0.1	+0.2	-0.5	+8.1