Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS01015 and HSERO_RS01020 are separated by 22 nucleotidesHSERO_RS01020 and HSERO_RS01025 are separated by 29 nucleotidesHSERO_RS01025 and HSERO_RS01030 are separated by 10 nucleotidesHSERO_RS01030 and HSERO_RS01035 overlap by 4 nucleotides HSERO_RS01015: HSERO_RS01015 - hypothetical protein, at 217,462 to 218,649 _RS01015 HSERO_RS01020: HSERO_RS01020 - hypothetical protein, at 218,672 to 219,103 _RS01020 HSERO_RS01025: HSERO_RS01025 - hypothetical protein, at 219,133 to 220,320 _RS01025 HSERO_RS01030: HSERO_RS01030 - tail-like protein, at 220,331 to 220,822 _RS01030 HSERO_RS01035: HSERO_RS01035 - phage-related tail protein, at 220,819 to 221,499 _RS01035
Group Condition HSERO_RS01015 HSERO_RS01020 HSERO_RS01025 HSERO_RS01030 HSERO_RS01035
carbon source L-Fucose (C) -0.3 -2.4 +0.1 -0.2 N.D.
control NoPredeControl -0.3 -1.4 -0.4 -0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.1 -1.3 +0.0 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 -0.7 -0.1 -0.9 N.D.
carbon source D-Lactate (C) +0.4 -1.3 -0.0 -0.2 N.D.
carbon source L-Fucose (C) +0.2 -1.4 +0.2 -0.0 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.3 +0.5 -0.6 -0.6 N.D.
carbon source Carbon source Deoxyribonucleic from herring sperm 5 mg/mL -0.1 -0.8 +0.3 -0.2 N.D.
stress Dimethyl Sulfoxide 5 vol% +0.1 -0.6 +0.3 -0.4 N.D.
control NoPredeControl +0.1 +0.9 -0.4 -0.7 N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.4 +0.7 +0.1 -0.4 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.1 -0.3 -0.4 +0.9 N.D.
r2a control R2A control -0.1 +0.8 +0.1 -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 +1.2 -0.3 -0.2 N.D.
stress nitrate 200 mM -0.3 +0.6 -0.4 +0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +0.9 +0.2 -0.2 N.D.
agar plate interaction control Taped volatile agar plate with no fungus +0.1 +1.1 +0.1 -0.6 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.8 +0.5 -0.6 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +0.4 +0.8 -0.0 N.D.
carbon source pyruvate (C) -0.1 +0.8 +0.3 -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 +0.8 +0.4 -0.4 N.D.
carbon source D-Gluconic Acid (C) -0.1 +0.4 +0.5 +0.4 N.D.
carbon source D-Ribose (C) +0.5 +0.5 +0.4 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 +0.4 +0.6 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 +0.8 +0.1 +0.4 N.D.
carbon source L-Arabinose (C) -0.1 +1.1 -0.0 +0.4 N.D.
agar plate interaction control Taped volatile agar plate with no fungus +0.1 +1.2 +0.1 +0.0 N.D.
carbon source Xylitol (C) +0.1 +1.2 +0.2 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 -0.2 +0.0 +1.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.3 +0.2 +0.2 N.D.
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