Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS00920	HSERO_RS00925	HSERO_RS00930	HSERO_RS00935	HSERO_RS00940
stress	nitrate 200 mM	+0.2	-2.2	+0.1	-0.1	-0.8
stress	Dimethyl Sulfoxide 5 vol%	-0.2	-1.9	-0.1	+0.0	+0.4
plant	Control soil assay; outgrowth in LB	-0.5	-0.5	-0.2	-0.3	-0.0
control	NoPredeControl	-0.8	-0.5	-0.0	+0.1	-0.1
stress	Thallium(I) acetate 0.001 mg/ml	+0.1	-0.5	-0.2	-0.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.9	-0.3	-0.0	-0.2
stress	Nickel (II) chloride 0.6 mM	-0.1	-1.5	+0.5	-0.2	+0.3
stress	Lomefloxacin 0.012 mM	-0.5	-0.8	+0.2	-0.3	+0.4
carbon source	Xylitol (C)	-0.5	+0.1	+0.3	-0.3	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.0	-1.5	+0.1	+0.1	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.0	-0.5	+0.5	-0.2	-0.5
carbon source	D-Glucose (C)	-0.7	+0.5	+0.3	-0.0	-0.7
carbon source	L-Arabinose (C)	-0.1	+0.3	+0.3	-0.3	-0.8
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.6	-0.6	-0.1	-0.1	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-1.0	+0.5	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.5	+0.0	-0.0	+0.5
stress	sodium fluoride 100 mM	-0.4	+0.1	-0.2	-0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	-1.0	+0.2	-0.0	+0.6
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.2	-0.7	+0.3	+0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-0.5	-0.1	+0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	-0.5	-0.1	+0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-0.4	-0.1	-0.1	+0.7
carbon source	L-Arabinose (C)	-0.5	+0.3	+0.3	-0.1	+0.2
carbon source	D-Xylose (C)	-0.2	+0.5	+0.5	-0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.7	-0.0	+0.2	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.6	-0.8	-0.0	+0.4	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-0.6	+0.0	+0.1	+0.6
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+1.3	-0.2	-0.0	-0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-0.3	+0.0	+0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.5	-0.2	+0.1	+0.1	+0.7