Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS00755 and HSERO_RS00760 are separated by 291 nucleotidesHSERO_RS00760 and HSERO_RS00765 are separated by 204 nucleotidesHSERO_RS00765 and HSERO_RS00770 are separated by 287 nucleotidesHSERO_RS00770 and HSERO_RS00775 are separated by 120 nucleotides HSERO_RS00755: HSERO_RS00755 - delta-aminolevulinic acid dehydratase, at 157,855 to 158,874 _RS00755 HSERO_RS00760: HSERO_RS00760 - GTP-binding protein EngB, at 159,166 to 159,906 _RS00760 HSERO_RS00765: HSERO_RS00765 - cytochrome C, at 160,111 to 160,773 _RS00765 HSERO_RS00770: HSERO_RS00770 - cytochrome C biogenesis protein ResB, at 161,061 to 163,211 _RS00770 HSERO_RS00775: HSERO_RS00775 - cytochrome C biogenesis protein, at 163,332 to 164,486 _RS00775
Group Condition HSERO_RS00755 HSERO_RS00760 HSERO_RS00765 HSERO_RS00770 HSERO_RS00775
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days N.D. N.D. -2.9 N.D. N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days N.D. N.D. -2.6 N.D. N.D.
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days N.D. N.D. -2.0 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. -1.9 N.D. N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days N.D. N.D. -1.9 N.D. N.D.
r2a control R2A control N.D. N.D. -1.9 N.D. N.D.
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. N.D. -1.7 N.D. N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days N.D. N.D. -1.7 N.D. N.D.
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days N.D. N.D. -1.6 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. -1.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -1.6 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. -1.5 N.D. N.D.
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days N.D. N.D. -1.5 N.D. N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X N.D. N.D. -1.4 N.D. N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X N.D. N.D. -1.3 N.D. N.D.
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days N.D. N.D. -1.3 N.D. N.D.
agar plate interaction control Taped volatile agar plate with no fungus N.D. N.D. -1.1 N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. -1.1 N.D. N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-1 N.D. N.D. -1.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -1.0 N.D. N.D.
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. N.D. -1.0 N.D. N.D.
nitrogen source L-Glutamic (N); high aeration N.D. N.D. -1.0 N.D. N.D.
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days N.D. N.D. -1.0 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -1.0 N.D. N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. N.D. -1.0 N.D. N.D.
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM N.D. N.D. -0.9 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -0.9 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.9 N.D. N.D.
carbon source L-mannose (C) N.D. N.D. -0.9 N.D. N.D.
r2a control R2A control N.D. N.D. -0.9 N.D. N.D.
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