Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS00530 and HSERO_RS00535 are separated by 331 nucleotidesHSERO_RS00535 and HSERO_RS00540 are separated by 28 nucleotidesHSERO_RS00540 and HSERO_RS00545 are separated by 329 nucleotidesHSERO_RS00545 and HSERO_RS00550 are separated by 156 nucleotides HSERO_RS00530: HSERO_RS00530 - DNA-directed RNA polymerase subunit beta', at 120,045 to 124,286 _RS00530 HSERO_RS00535: HSERO_RS00535 - TonB-dependent receptor, at 124,618 to 126,906 _RS00535 HSERO_RS00540: HSERO_RS00540 - hemin transporter, at 126,935 to 128,080 _RS00540 HSERO_RS00545: HSERO_RS00545 - 30S ribosomal protein S12, at 128,410 to 128,793 _RS00545 HSERO_RS00550: HSERO_RS00550 - 30S ribosomal protein S7, at 128,950 to 129,420 _RS00550
Group Condition HSERO_RS00530 HSERO_RS00535 HSERO_RS00540 HSERO_RS00545 HSERO_RS00550
carbon source L-Lactate (C) N.D. -0.3 -0.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.1 -0.6 N.D. N.D.
carbon source L-Arabinose (C) N.D. -0.2 -0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.2 -0.4 N.D. N.D.
carbon source Xylitol (C) N.D. -0.1 -0.4 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -0.2 -0.3 N.D. N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. -0.3 -0.2 N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 N.D. -0.3 -0.2 N.D. N.D.
carbon source D-Mannose (C) N.D. -0.3 -0.1 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.1 -0.6 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.2 -0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.1 -0.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.2 -0.5 N.D. N.D.
stress sodium fluoride 100 mM N.D. +0.2 -0.5 N.D. N.D.
control NoPredeControl N.D. +0.3 -0.5 N.D. N.D.
carbon source D-Glucose-6-Phosphate (C) N.D. -0.2 +0.3 N.D. N.D.
carbon source pyruvate (C) N.D. -0.2 +0.3 N.D. N.D.
carbon source m-Inositol (C) N.D. -0.2 +0.3 N.D. N.D.
stress Lomefloxacin 0.012 mM N.D. -0.2 +0.3 N.D. N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. -0.2 +0.4 N.D. N.D.
carbon source L-Rhamnose (C) N.D. -0.1 +0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.4 -0.1 N.D. N.D.
carbon source L-Asparagine (C) N.D. -0.2 +0.6 N.D. N.D.
carbon source D-Galactose (C) N.D. -0.1 +0.5 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. -0.0 +0.5 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. -0.0 +0.5 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +0.1 +0.5 N.D. N.D.
carbon source Glycerol (C) N.D. +0.1 +0.5 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +0.4 +0.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.2 +0.7 N.D. N.D.
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