Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS00360 and HSERO_RS00365 are separated by 170 nucleotidesHSERO_RS00365 and HSERO_RS00370 are separated by 134 nucleotidesHSERO_RS00370 and HSERO_RS00375 are separated by 39 nucleotidesHSERO_RS00375 and HSERO_RS00380 are separated by 17 nucleotides HSERO_RS00360: HSERO_RS00360 - hypothetical protein, at 86,691 to 87,035 _RS00360 HSERO_RS00365: HSERO_RS00365 - membrane protein, at 87,206 to 87,751 _RS00365 HSERO_RS00370: HSERO_RS00370 - peptide transporter, at 87,886 to 89,892 _RS00370 HSERO_RS00375: HSERO_RS00375 - phosphatidate cytidylyltransferase, at 89,932 to 90,873 _RS00375 HSERO_RS00380: HSERO_RS00380 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 90,891 to 91,508 _RS00380
Group Condition HSERO_RS00360 HSERO_RS00365 HSERO_RS00370 HSERO_RS00375 HSERO_RS00380
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.1 -0.7 -0.7 -0.2
carbon source D-Gluconic Acid (C) N.D. -0.5 -0.3 -0.1 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.7 -0.6 -0.1 +0.3
carbon source L-Asparagine (C) N.D. -0.5 -0.0 +0.4 -0.9
stress Cisplatin 0.003 mg/ml N.D. -0.8 +0.0 +0.4 -0.5
carbon source D-Lactate (C) N.D. -0.5 -0.1 +0.4 -0.5
carbon source D-Glucose (C) N.D. -0.2 -0.2 +0.5 -0.6
stress Thallium(I) acetate 0.001 mg/ml N.D. -0.9 +0.4 +0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.4 -0.9 +0.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.3 -0.6 -0.2 +0.5
control NoPredeControl N.D. -0.8 +0.0 +0.5 +0.2
stress Sisomicin 0.125 mg/ml N.D. -0.1 +0.3 +0.7 -0.8
stress Nickel (II) chloride 0.6 mM N.D. -0.7 +0.3 +0.6 -0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. +0.7 -0.3 +0.5 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.0 +0.0 +1.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.1 -0.5 +0.8 -0.1
carbon source Xylitol (C) N.D. +0.7 -0.2 +0.5 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.3 -0.8 +0.4 +0.6
stress Lomefloxacin 0.012 mM N.D. -0.2 +0.8 +0.7 -0.4
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. +0.5 -0.3 +0.7 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.2 -0.3 +0.8 +0.3
carbon source D-Ribose (C) N.D. -0.6 -0.1 +1.0 +0.8
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. -0.2 -0.2 +1.6 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.8 +0.2 +0.7 -0.3
agar plate interaction control Taped volatile agar plate with no fungus N.D. +0.4 +0.2 +0.8 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +1.0 -0.3 -0.0 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +1.1 -0.2 +0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +1.5 -0.4 +0.4 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +1.8 -0.4 +0.2 +0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +1.6 +0.2 +0.2 +0.4
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