Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS00225 and HSERO_RS00230 are separated by 489 nucleotidesHSERO_RS00230 and HSERO_RS00235 are separated by 284 nucleotidesHSERO_RS00235 and HSERO_RS00240 are separated by 187 nucleotidesHSERO_RS00240 and HSERO_RS00245 are separated by 30 nucleotides HSERO_RS00225: HSERO_RS00225 - glutamine amidotransferase, at 58,885 to 59,634 _RS00225 HSERO_RS00230: HSERO_RS00230 - hypothetical protein, at 60,124 to 60,444 _RS00230 HSERO_RS00235: HSERO_RS00235 - MFS transporter, at 60,729 to 62,000 _RS00235 HSERO_RS00240: HSERO_RS00240 - LysR family transcription regulator protein, at 62,188 to 63,078 _RS00240 HSERO_RS00245: HSERO_RS00245 - hypothetical protein, at 63,109 to 63,564 _RS00245
Group Condition HSERO_RS00225 HSERO_RS00230 HSERO_RS00235 HSERO_RS00240 HSERO_RS00245
carbon source D-Lactate (C) -0.4 N.D. -0.4 -1.0 -0.3
carbon source D-Gluconic Acid (C) -0.1 N.D. -0.3 -0.7 -0.9
carbon source D-Glucose-6-Phosphate (C) -0.1 N.D. -0.3 -0.7 -0.8
carbon source D-Sorbitol (C) +0.1 N.D. -0.2 -0.8 -1.0
carbon source Xylitol (C) -0.3 N.D. -0.2 -0.7 -0.6
stress Sisomicin 0.125 mg/ml +0.2 N.D. -0.1 -0.9 -0.9
carbon source L-Fucose (C) +0.1 N.D. -0.5 -0.8 -0.5
carbon source D,L-Lactate (C) -0.1 N.D. -0.4 -0.5 -0.7
carbon source D,L-Lactate (C) -0.3 N.D. -0.4 -0.5 -0.4
carbon source L-Rhamnose (C) -0.0 N.D. -0.3 -1.0 -0.2
carbon source D-Mannose (C) -0.3 N.D. -0.3 -0.5 -0.5
carbon source succinate (C) +0.1 N.D. -0.5 -0.2 -0.9
stress Dimethyl Sulfoxide 5 vol% +0.1 N.D. -0.2 -0.6 -0.6
carbon source L-Rhamnose (C) +0.1 N.D. -0.2 -0.5 -0.8
carbon source D-Glucose (C) -0.2 N.D. +0.1 -0.0 -1.1
carbon source L-Glutamine (C) +0.1 N.D. -0.3 -0.3 -0.8
carbon source L-Arabinose (C) +0.2 N.D. -0.2 -0.7 -0.5
carbon source L-Lactate (C) +0.1 N.D. -0.5 -0.4 -0.4
carbon source L-Proline (C) +0.2 N.D. -0.4 -0.3 -0.6
carbon source L-Fucose (C) +0.3 N.D. -0.1 -0.6 -0.5
stress Lomefloxacin 0.012 mM +0.6 N.D. +0.1 -0.3 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 N.D. -0.3 -0.3 +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 N.D. +0.7 -0.4 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 N.D. +0.3 +0.7 -0.2
supernatant control Vogels_fungal_media; pH 5.5 -0.4 N.D. -0.1 +0.8 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 N.D. -0.1 -0.5 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.0 N.D. +0.1 -0.3 -0.1
control NoPredeControl +0.6 N.D. -0.5 +0.7 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 N.D. +0.7 +0.7 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 N.D. +0.5 +0.6 +0.7
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