Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS00025 and HSERO_RS00030 are separated by 178 nucleotidesHSERO_RS00030 and HSERO_RS00035 are separated by 85 nucleotidesHSERO_RS00035 and HSERO_RS00040 are separated by 260 nucleotidesHSERO_RS00040 and HSERO_RS00045 are separated by 107 nucleotides HSERO_RS00025: HSERO_RS00025 - reverse transcriptase, at 8,177 to 11,167 _RS00025 HSERO_RS00030: HSERO_RS00030 - hypothetical protein, at 11,346 to 12,347 _RS00030 HSERO_RS00035: HSERO_RS00035 - 4-aminobutyrate aminotransferase, at 12,433 to 13,761 _RS00035 HSERO_RS00040: HSERO_RS00040 - hypothetical protein, at 14,022 to 14,987 _RS00040 HSERO_RS00045: HSERO_RS00045 - hypothetical protein, at 15,095 to 16,108 _RS00045
Group Condition HSERO_RS00025 HSERO_RS00030 HSERO_RS00035 HSERO_RS00040 HSERO_RS00045
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -0.6 -0.5 -0.4 -0.9
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.6 -0.7 -0.4 -0.1 -0.6
r2a control R2A control -0.5 -0.5 -0.5 -0.5 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -0.3 +0.0 -0.0 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.3 -0.3 -0.3 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -0.2 -0.1 -0.3 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 -0.2 -0.5 -0.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -0.4 +0.1 -0.2 -0.4
agar plate interaction control Taped volatile agar plate with no fungus -0.3 -0.4 -0.1 -0.3 -0.2
carbon source m-Inositol (C) -0.1 -0.1 -0.1 -0.7 -0.3
r2a control R2A control -0.2 -0.1 -0.3 -0.2 -0.4
supernatant control Vogels_fungal_media 0.1X -0.1 -0.2 -0.2 -0.2 -0.5
carbon source D-Galacturonic Acid (C) -0.1 -0.1 -0.1 -0.7 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 -0.2 -0.3 -0.3 -0.2
agar plate interaction control Taped volatile agar plate with no fungus -0.2 -0.3 +0.0 -0.2 -0.4
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -0.2 -0.2 -0.5 +0.1 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -0.3 +0.0 -0.7 +0.2
supernatant control Vogels_fungal_media 0.1X -0.2 -0.2 +0.1 -0.3 -0.3
carbon source L-Rhamnose (C) -0.1 -0.0 +0.2 -0.8 +0.0
carbon source Xylitol (C) -0.1 -0.1 -0.5 -0.2 +0.2
carbon source D,L-Lactate (C) -0.1 -0.1 -0.0 -0.6 +0.5
carbon source L-Arabinose (C) -0.1 -0.1 +0.2 -0.6 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 -0.3 -0.2 +0.6 -0.0
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.1 +0.1 +0.3 -0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.0 +0.1 -0.2 -0.5 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 -0.1 +0.0 -0.3 +0.7
plant Control soil assay; outgrowth in LB +0.2 +0.1 +0.1 -0.4 +0.4
carbon source L-Asparagine (C) +0.1 +0.2 +0.3 -0.3 +0.3
plant Control soil assay; outgrowth in LB +0.3 +0.2 +0.3 -0.4 +0.4
carbon source L-Asparagine (C) +0.3 +0.3 +0.4 -0.0 +0.5
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