Fitness for 5 genes in Parabacteroides merdae CL09T00C40

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500 ntHMPREF1078_RS15605 and HMPREF1078_RS15610 are separated by 190 nucleotidesHMPREF1078_RS15610 and HMPREF1078_RS15615 are separated by 409 nucleotidesHMPREF1078_RS15615 and HMPREF1078_RS15620 are separated by 44 nucleotidesHMPREF1078_RS15620 and HMPREF1078_RS15625 are separated by 4 nucleotides HMPREF1078_RS15605: HMPREF1078_RS15605 - DNA-binding domain-containing protein, at 232,508 to 233,278 _RS15605 HMPREF1078_RS15610: HMPREF1078_RS15610 - helix-turn-helix domain-containing protein, at 233,469 to 234,644 _RS15610 HMPREF1078_RS15615: HMPREF1078_RS15615 - TonB-dependent receptor, at 235,054 to 237,852 _RS15615 HMPREF1078_RS15620: HMPREF1078_RS15620 - Ig domain-containing protein, at 237,897 to 239,537 _RS15620 HMPREF1078_RS15625: HMPREF1078_RS15625 - toxin-antitoxin system YwqK family antitoxin, at 239,542 to 240,018 _RS15625
Group Condition HMPREF1078_RS15605 HMPREF1078_RS15610 HMPREF1078_RS15615 HMPREF1078_RS15620 HMPREF1078_RS15625
carbon source D-Maltose 10 mg/mL (C) -0.3 -0.2 -0.2 -0.3 -1.0
carbon source pectate 2.5 mg/mL (C) -0.5 +0.3 +0.0 -0.5 -0.4
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) -0.3 +0.0 -0.2 +0.0 -0.6
carbon source Mucin from porcine stomach type II 2.5 mg/mL (C) +0.1 -0.2 -0.0 -0.3 -0.5
carbon source complex media GAM 1 x (C) -0.5 +0.1 -0.1 -0.3 +0.0
carbon source complex media GAM 1 x (C) -0.6 -0.1 -0.2 +0.2 -0.2
carbon source D-Galactose 10 mg/mL (C) +0.0 -0.2 -0.2 -0.3 -0.2
carbon source Sucrose 10 mg/mL (C) -0.0 -0.0 -0.3 -0.2 -0.3
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) -0.1 -0.3 -0.1 -0.4 +0.1
carbon source complex media Brucella 1 x (C) -0.3 +0.1 -0.1 -0.1 -0.3
carbon source Dextrin from potato starch 2.5 mg/mL (C) -0.0 +0.2 -0.2 -0.5 -0.0
carbon source Lentilan from mushroom 2.5 mg/mL (C) +0.2 -0.1 -0.1 -0.1 -0.5
carbon source D-Raffinose 10 mg/mL (C) +0.3 -0.4 -0.2 -0.3 +0.1
carbon source D-Xylose 10 mg/mL (C) +0.2 -0.1 -0.3 -0.2 -0.0
carbon source Sucrose 10 mg/mL (C) +0.0 -0.2 -0.1 +0.2 -0.3
carbon source Xylan from corncob 2.5 mg/mL (C) +0.0 +0.1 -0.5 -0.2 +0.2
carbon source D-Mannose 10 mg/mL (C) -0.3 -0.1 -0.1 +0.1 +0.1
carbon source pectate 2.5 mg/mL (C) -0.4 +0.3 +0.0 -0.2 -0.0
carbon source Xylan from corncob 2.5 mg/mL (C) -0.0 -0.1 -0.1 -0.3 +0.2
carbon source NAG 10 mg/mL (C) +0.2 -0.1 -0.1 -0.1 -0.2
carbon source .-Glucan from yeast 2.5 mg/mL (C) +0.2 -0.1 +0.1 -0.3 -0.1
carbon source b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C) -0.1 -0.1 +0.0 +0.3 -0.4
carbon source Mucin from porcine stomach type III 2.5 mg/mL (C) +0.2 -0.2 -0.1 +0.2 -0.3
carbon source D-Maltose 10 mg/mL (C) +0.1 +0.7 +0.0 +0.1 -0.7
carbon source complex media Columbia 1 x (C) +0.2 -0.3 -0.0 +0.3 +0.0
carbon source NAG 10 mg/mL (C) +0.3 -0.0 -0.1 -0.2 +0.4
carbon source complex media marine_broth_2216 1 x (C) +0.2 +0.2 +0.1 -0.1 +0.3
carbon source complex media Yeast Extract 1 x (C) +0.0 +0.2 +0.1 -0.1 +0.5
carbon source complex media marine_broth_2216 1 x (C) +0.2 +0.2 +0.2 +0.1 +0.1
carbon source Dextrin from potato starch 2.5 mg/mL (C) +0.3 +0.4 -0.2 +0.1 +0.7
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