Fitness for 5 genes in Parabacteroides merdae CL09T00C40

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500 ntHMPREF1078_RS13640 and HMPREF1078_RS13645 are separated by 132 nucleotidesHMPREF1078_RS13645 and HMPREF1078_RS13650 are separated by 68 nucleotidesHMPREF1078_RS13650 and HMPREF1078_RS13655 are separated by 378 nucleotidesHMPREF1078_RS13655 and HMPREF1078_RS13660 are separated by 32 nucleotides HMPREF1078_RS13640: HMPREF1078_RS13640 - SDR family oxidoreductase, at 176,444 to 177,256 _RS13640 HMPREF1078_RS13645: HMPREF1078_RS13645 - LacI family DNA-binding transcriptional regulator, at 177,389 to 178,444 _RS13645 HMPREF1078_RS13650: HMPREF1078_RS13650 - hypothetical protein, at 178,513 to 179,151 _RS13650 HMPREF1078_RS13655: HMPREF1078_RS13655 - efflux RND transporter periplasmic adaptor subunit, at 179,530 to 180,741 _RS13655 HMPREF1078_RS13660: HMPREF1078_RS13660 - efflux RND transporter permease subunit, at 180,774 to 183,992 _RS13660
Group Condition HMPREF1078_RS13640 HMPREF1078_RS13645 HMPREF1078_RS13650 HMPREF1078_RS13655 HMPREF1078_RS13660
carbon source complex media MRS 1 x (C) -0.0 -0.7 -1.6 -0.8 -0.5
carbon source complex media MRS 1 x (C) +0.0 -0.4 -1.2 -0.5 -0.2
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) -0.2 -0.0 -0.7 -0.4 -0.2
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) -0.2 -0.1 -0.6 -0.2 -0.2
carbon source Mucin from porcine stomach type III 2.5 mg/mL (C) -0.5 -0.3 -0.4 -0.1 -0.1
carbon source complex media Yeast Extract 1 x (C) -0.1 -0.5 -0.5 -0.1 +0.0
carbon source complex media Yeast Extract 1 x (C) -0.3 -0.5 -0.3 +0.1 -0.0
carbon source complex media LB 1 x (C) -0.3 -0.1 -0.5 -0.1 +0.0
carbon source .-Glucan from yeast 2.5 mg/mL (C) -0.0 -0.4 -0.3 -0.0 -0.2
carbon source Mucin from porcine stomach type II 2.5 mg/mL (C) -0.2 -0.2 -0.2 -0.2 +0.1
carbon source NAG 10 mg/mL (C) -0.3 +0.1 -0.2 -0.2 -0.1
carbon source pectate 2.5 mg/mL (C) -0.2 -0.2 -0.4 -0.2 +0.1
carbon source pectate 2.5 mg/mL (C) +0.2 -0.3 -0.4 -0.1 -0.0
carbon source complex media ABB 1 x (C) +0.0 -0.3 -0.5 +0.2 +0.1
carbon source complex media marine_broth_2216 1 x (C) -0.2 -0.1 -0.4 +0.1 +0.0
carbon source .-Glucan from yeast 2.5 mg/mL (C) +0.2 -0.2 -0.7 +0.3 -0.0
carbon source complex media LB 1 x (C) +0.2 -0.2 -0.4 -0.0 +0.0
carbon source Laminarin from Laminaria digitata 2.5 mg/mL (C) -0.1 +0.4 -0.1 +0.1 -0.1
carbon source Sucrose 10 mg/mL (C) -0.2 +0.3 +0.3 +0.3 +0.2
carbon source D-Xylose 10 mg/mL (C) -0.1 +0.5 +0.1 +0.1 +0.3
carbon source complex media GAM 1 x (C) +0.3 +0.2 +0.1 +0.3 +0.2
carbon source complex media GAM 1 x (C) +0.1 +0.3 -0.1 +0.5 +0.3
carbon source D-Raffinose 10 mg/mL (C) -0.1 +0.3 +0.5 +0.3 +0.2
carbon source D-Raffinose 10 mg/mL (C) -0.1 +0.6 +0.5 +0.4 +0.1
carbon source D-Maltose 10 mg/mL (C) -0.2 +0.5 +0.4 +0.4 +0.4
carbon source D-Xylose 10 mg/mL (C) -0.0 +0.4 +0.2 +0.8 +0.5
carbon source D-Maltose 10 mg/mL (C) +0.1 +0.6 +0.9 +0.5 +0.5
carbon source Xylan from corncob 2.5 mg/mL (C) +0.3 +0.8 +0.4 +0.6 +0.5
carbon source Xylan from corncob 2.5 mg/mL (C) +0.3 +1.0 +0.7 +0.4 +0.4
carbon source Sucrose 10 mg/mL (C) +0.1 +1.4 +1.5 +0.9 +0.6
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