Fitness for 5 genes in Parabacteroides merdae CL09T00C40

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500 ntHMPREF1078_RS13010 and HMPREF1078_RS13015 are separated by 80 nucleotidesHMPREF1078_RS13015 and HMPREF1078_RS13020 are separated by 81 nucleotidesHMPREF1078_RS13020 and HMPREF1078_RS13025 are separated by 354 nucleotidesHMPREF1078_RS13025 and HMPREF1078_RS13030 are separated by 270 nucleotides HMPREF1078_RS13010: HMPREF1078_RS13010 - TrkH family potassium uptake protein, at 13,875 to 15,329 _RS13010 HMPREF1078_RS13015: HMPREF1078_RS13015 - Holliday junction branch migration protein RuvA, at 15,410 to 16,003 _RS13015 HMPREF1078_RS13020: HMPREF1078_RS13020 - cell surface protein SprA, at 16,085 to 23,536 _RS13020 HMPREF1078_RS13025: HMPREF1078_RS13025 - uracil-DNA glycosylase, at 23,891 to 24,553 _RS13025 HMPREF1078_RS13030: HMPREF1078_RS13030 - tetraacyldisaccharide 4'-kinase, at 24,824 to 25,936 _RS13030
Group Condition HMPREF1078_RS13010 HMPREF1078_RS13015 HMPREF1078_RS13020 HMPREF1078_RS13025 HMPREF1078_RS13030
carbon source Sucrose 10 mg/mL (C) -2.1 -1.6 -3.6 +0.1 N.D.
carbon source D-Xylose 10 mg/mL (C) -2.0 -1.9 -3.3 +0.4 N.D.
carbon source D-Mannose 10 mg/mL (C) -1.4 -1.8 -3.4 -0.1 N.D.
carbon source D-Galactose 10 mg/mL (C) -1.4 -1.9 -3.2 +0.2 N.D.
carbon source D-Galactose 10 mg/mL (C) -1.4 -1.2 -3.4 -0.2 N.D.
carbon source D-Raffinose 10 mg/mL (C) -1.1 -1.8 -3.5 +0.3 N.D.
carbon source Xylan from corncob 2.5 mg/mL (C) -1.2 -2.0 -2.8 +0.2 N.D.
carbon source Beta-Lactose 10 mg/mL (C) -1.0 -1.3 -3.1 -0.3 N.D.
carbon source complex media MRS 1 x (C) -1.6 -0.6 -3.4 -0.1 N.D.
carbon source Beta-Lactose 10 mg/mL (C) -0.9 -1.1 -3.2 -0.1 N.D.
carbon source Xylan from corncob 2.5 mg/mL (C) -1.6 -1.3 -2.6 +0.3 N.D.
carbon source D-Raffinose 10 mg/mL (C) -0.6 -1.6 -3.0 +0.2 N.D.
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) -0.6 -2.4 -2.0 -0.1 N.D.
carbon source D-Mannose 10 mg/mL (C) -0.8 -1.3 -3.2 +0.3 N.D.
carbon source Sucrose 10 mg/mL (C) -1.2 -1.9 -1.9 +0.0 N.D.
carbon source D-Maltose 10 mg/mL (C) -1.3 -1.3 -2.3 +0.1 N.D.
carbon source complex media MRS 1 x (C) +0.6 -1.5 -3.5 -0.3 N.D.
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) -1.4 -0.6 -2.0 -0.1 N.D.
carbon source complex media BHI 1 x (C) -1.7 -0.9 -1.5 -0.0 N.D.
carbon source D-Glucose 10 mg/mL (C) -0.1 -1.4 -2.9 +0.3 N.D.
carbon source D-Xylose 10 mg/mL (C) -0.7 -1.5 -2.4 +0.5 N.D.
carbon source D-Glucose 10 mg/mL (C) -0.5 -0.5 -3.2 +0.1 N.D.
carbon source Mucin from porcine stomach type III 2.5 mg/mL (C) -1.4 -0.8 -1.6 -0.1 N.D.
carbon source Mucin from porcine stomach type II 2.5 mg/mL (C) -1.6 -0.6 -1.2 -0.5 N.D.
carbon source Mucin from porcine stomach type II 2.5 mg/mL (C) -1.1 -1.4 -1.4 -0.0 N.D.
carbon source complex media Columbia 1 x (C) -1.9 -0.7 -1.1 -0.2 N.D.
carbon source NAG 10 mg/mL (C) -0.6 -1.2 -2.0 +0.2 N.D.
carbon source Lentilan from mushroom 2.5 mg/mL (C) +0.4 -1.0 -2.3 -0.2 N.D.
carbon source complex media GAM 1 x (C) +2.7 -0.4 -0.9 +0.2 N.D.
carbon source complex media GAM 1 x (C) +3.6 -1.0 -0.5 -0.1 N.D.
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