Fitness for 5 genes in Parabacteroides merdae CL09T00C40

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500 ntHMPREF1078_RS12855 and HMPREF1078_RS12860 are separated by 221 nucleotidesHMPREF1078_RS12860 and HMPREF1078_RS12865 are separated by 129 nucleotidesHMPREF1078_RS12865 and HMPREF1078_RS12870 are separated by 536 nucleotidesHMPREF1078_RS12870 and HMPREF1078_RS12875 overlap by 4 nucleotides HMPREF1078_RS12855: HMPREF1078_RS12855 - DUF4974 domain-containing protein, at 604,383 to 605,369 _RS12855 HMPREF1078_RS12860: HMPREF1078_RS12860 - RNA polymerase sigma-70 factor, at 605,591 to 606,166 _RS12860 HMPREF1078_RS12865: HMPREF1078_RS12865 - S41 family peptidase, at 606,296 to 609,547 _RS12865 HMPREF1078_RS12870: HMPREF1078_RS12870 - lysine exporter LysO family protein, at 610,084 to 610,710 _RS12870 HMPREF1078_RS12875: HMPREF1078_RS12875 - LysO family transporter, at 610,707 to 610,985 _RS12875
Group Condition HMPREF1078_RS12855 HMPREF1078_RS12860 HMPREF1078_RS12865 HMPREF1078_RS12870 HMPREF1078_RS12875
carbon source Sucrose 10 mg/mL (C) -0.1 -0.4 -0.2 -0.3 -0.4
carbon source .-Glucan from yeast 2.5 mg/mL (C) -0.2 -0.4 +0.0 -0.1 -0.6
carbon source Laminarin from Laminaria digitata 2.5 mg/mL (C) -0.4 -0.1 -0.2 +0.0 -0.4
carbon source D-Maltose 10 mg/mL (C) +0.2 -0.0 -0.1 -0.7 -0.2
carbon source D-Galactose 10 mg/mL (C) -0.1 -0.0 -0.2 -0.4 -0.1
carbon source complex media ABB 1 x (C) -0.0 -0.0 +0.0 -0.2 -0.5
carbon source Beta-Lactose 10 mg/mL (C) -0.1 -0.1 -0.1 +0.0 -0.4
carbon source complex media MRS 1 x (C) -0.1 -0.2 +0.0 -0.1 -0.3
carbon source D-Raffinose 10 mg/mL (C) -0.4 -0.0 -0.2 -0.1 +0.1
carbon source Mucin from porcine stomach type III 2.5 mg/mL (C) -0.2 -0.1 -0.1 -0.2 -0.0
carbon source Xylan from corncob 2.5 mg/mL (C) -0.1 +0.2 -0.0 -0.2 -0.5
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) -0.0 -0.1 +0.0 -0.1 -0.4
carbon source D-Galactose 10 mg/mL (C) -0.2 +0.1 -0.1 -0.4 +0.1
carbon source D-Maltose 10 mg/mL (C) +0.0 +0.1 -0.2 -0.2 -0.3
carbon source complex media MRS 1 x (C) -0.2 -0.1 -0.0 +0.0 -0.2
carbon source D-Raffinose 10 mg/mL (C) +0.0 -0.1 -0.2 -0.1 -0.2
carbon source D-Xylose 10 mg/mL (C) +0.0 +0.0 -0.0 -0.2 -0.3
carbon source Mucin from porcine stomach type III 2.5 mg/mL (C) -0.1 -0.0 -0.1 +0.1 -0.3
carbon source NAG 10 mg/mL (C) -0.2 +0.0 -0.4 -0.1 +0.2
carbon source complex media Brucella 1 x (C) -0.3 -0.2 -0.1 +0.1 +0.0
carbon source complex media GAM 1 x (C) -0.2 -0.1 -0.0 -0.2 +0.1
carbon source D-Mannose 10 mg/mL (C) -0.2 +0.1 -0.2 -0.2 +0.1
carbon source .-Glucan from yeast 2.5 mg/mL (C) -0.3 -0.2 +0.2 +0.0 +0.0
carbon source NAG 10 mg/mL (C) +0.0 -0.1 -0.1 -0.3 +0.2
carbon source complex media LB 1 x (C) -0.1 -0.2 +0.0 +0.2 +0.0
carbon source D-Glucose 10 mg/mL (C) -0.1 +0.1 -0.2 -0.1 +0.2
carbon source complex media marine_broth_2216 1 x (C) -0.2 -0.1 +0.0 -0.1 +0.2
carbon source Sucrose 10 mg/mL (C) -0.2 +0.1 -0.1 -0.1 +0.2
carbon source b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C) -0.1 +0.2 -0.1 -0.4 +0.5
carbon source Dextrin from potato starch 2.5 mg/mL (C) -0.1 +0.4 +0.0 +0.2 +0.1
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