Fitness for 5 genes in Parabacteroides merdae CL09T00C40

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500 ntHMPREF1078_RS09835 and HMPREF1078_RS09840 are separated by 34 nucleotidesHMPREF1078_RS09840 and HMPREF1078_RS09850 are separated by 543 nucleotidesHMPREF1078_RS09850 and HMPREF1078_RS09855 are separated by 86 nucleotidesHMPREF1078_RS09855 and HMPREF1078_RS09860 overlap by 8 nucleotides HMPREF1078_RS09835: HMPREF1078_RS09835 - YebC/PmpR family DNA-binding transcriptional regulator, at 564,859 to 565,593 _RS09835 HMPREF1078_RS09840: HMPREF1078_RS09840 - phenylalanine--tRNA ligase subunit beta, at 565,628 to 568,093 _RS09840 HMPREF1078_RS09850: HMPREF1078_RS09850 - IS66 family transposase, at 568,637 to 570,208 _RS09850 HMPREF1078_RS09855: HMPREF1078_RS09855 - IS66 family insertion sequence element accessory protein TnpB, at 570,295 to 570,642 _RS09855 HMPREF1078_RS09860: HMPREF1078_RS09860 - hypothetical protein, at 570,635 to 571,057 _RS09860
Group Condition HMPREF1078_RS09835 HMPREF1078_RS09840 HMPREF1078_RS09850 HMPREF1078_RS09855 HMPREF1078_RS09860
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) -1.8 N.D. -0.1 -1.2 -0.0
carbon source complex media Yeast Extract 1 x (C) -0.6 N.D. +0.0 -0.7 -1.4
carbon source complex media MRS 1 x (C) -2.1 N.D. +0.0 -0.3 -0.1
carbon source complex media MRS 1 x (C) -1.9 N.D. +0.1 -0.7 +0.1
carbon source complex media Brucella 1 x (C) -0.8 N.D. -0.0 -0.4 -0.4
carbon source b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C) -1.1 N.D. +0.1 +0.1 -0.8
carbon source complex media RCM 1 x (C) -1.3 N.D. +0.1 -0.4 +0.1
carbon source Mucin from porcine stomach type II 2.5 mg/mL (C) -1.1 N.D. +0.0 +0.0 -0.4
carbon source Beta-Lactose 10 mg/mL (C) -0.1 N.D. -0.0 -1.3 +0.0
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) -1.1 N.D. +0.1 -0.0 -0.3
carbon source Mucin from porcine stomach type II 2.5 mg/mL (C) -1.3 N.D. +0.0 -0.2 +0.5
carbon source complex media BHI 1 x (C) -1.0 N.D. +0.1 +0.4 -0.3
carbon source D-Galactose 10 mg/mL (C) +0.0 N.D. -0.1 -1.3 +0.7
carbon source .-Glucan from yeast 2.5 mg/mL (C) -0.3 N.D. -0.0 +0.8 -1.0
carbon source NAG 10 mg/mL (C) +0.9 N.D. +0.0 -1.3 +0.5
carbon source D-Raffinose 10 mg/mL (C) +1.6 N.D. -0.1 -1.2 +0.1
carbon source D-Glucose 10 mg/mL (C) +1.1 N.D. +0.0 -0.7 -0.1
carbon source NAG 10 mg/mL (C) +0.9 N.D. -0.1 -0.7 +0.4
carbon source D-Xylose 10 mg/mL (C) +1.4 N.D. -0.1 -0.5 -0.2
carbon source Sucrose 10 mg/mL (C) +1.1 N.D. -0.2 -0.4 +0.5
carbon source Laminarin from Laminaria digitata 2.5 mg/mL (C) +0.5 N.D. -0.0 +0.6 +0.3
carbon source D-Raffinose 10 mg/mL (C) +3.0 N.D. -0.1 -1.0 -0.2
carbon source Xylan from corncob 2.5 mg/mL (C) +2.7 N.D. -0.1 -0.0 -0.6
carbon source D-Maltose 10 mg/mL (C) +3.3 N.D. +0.0 -1.0 -0.3
carbon source D-Xylose 10 mg/mL (C) +2.8 N.D. +0.1 -1.4 +0.4
carbon source Xylan from corncob 2.5 mg/mL (C) +3.4 N.D. +0.1 -0.7 +0.1
carbon source Dextrin from potato starch 2.5 mg/mL (C) +4.9 N.D. -0.1 -0.7 -0.0
carbon source D-Maltose 10 mg/mL (C) +5.2 N.D. -0.2 -1.2 +0.4
carbon source Sucrose 10 mg/mL (C) +5.0 N.D. +0.1 -0.8 +0.2
carbon source Dextrin from potato starch 2.5 mg/mL (C) +4.7 N.D. +0.1 -0.6 +0.6
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HMPREF1078_RS09835
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