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Protein
Homologs
Fitness for 5 genes in
Parabacteroides merdae CL09T00C40
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HMPREF1078_RS09430 and HMPREF1078_RS09435 are separated by 4 nucleotides
HMPREF1078_RS09435 and HMPREF1078_RS09440 are separated by 460 nucleotides
HMPREF1078_RS09440 and HMPREF1078_RS09445 are separated by 47 nucleotides
HMPREF1078_RS09445 and HMPREF1078_RS09450 are separated by 158 nucleotides
HMPREF1078_RS09430: HMPREF1078_RS09430 - hypothetical protein, at 467,884 to 469,329
_RS09430
HMPREF1078_RS09435: HMPREF1078_RS09435 - serine protease, at 469,334 to 470,413
_RS09435
HMPREF1078_RS09440: HMPREF1078_RS09440 - DUF418 domain-containing protein, at 470,874 to 472,055
_RS09440
HMPREF1078_RS09445: HMPREF1078_RS09445 - peptide-methionine (R)-S-oxide reductase MsrB, at 472,103 to 473,083
_RS09445
HMPREF1078_RS09450: HMPREF1078_RS09450 - pyridoxamine kinase, at 473,242 to 474,102
_RS09450
Group
Condition
HMPREF1078
_RS09430
HMPREF1078
_RS09435
HMPREF1078
_RS09440
HMPREF1078
_RS09445
HMPREF1078
_RS09450
carbon source
D-Maltose 10 mg/mL (C)
-2.0
-0.2
-0.1
-0.1
+0.3
carbon source
D-Xylose 10 mg/mL (C)
-1.8
+0.1
+0.1
-0.1
+0.0
carbon source
Sucrose 10 mg/mL (C)
-1.6
+0.2
-0.1
-0.1
-0.0
carbon source
Lentilan from mushroom 2.5 mg/mL (C)
-1.2
+0.0
+0.0
-0.1
-0.0
carbon source
D-Raffinose 10 mg/mL (C)
-1.0
-0.1
-0.1
-0.0
-0.1
carbon source
D-Maltose 10 mg/mL (C)
-0.4
-0.1
-0.3
+0.3
-0.6
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
-1.0
+0.0
-0.1
+0.2
-0.2
carbon source
D-Glucose 10 mg/mL (C)
-0.5
-0.4
-0.0
+0.2
-0.2
carbon source
Xylan from corncob 2.5 mg/mL (C)
-0.9
+0.1
-0.0
+0.1
+0.0
carbon source
Xylan from corncob 2.5 mg/mL (C)
-1.0
+0.3
-0.1
-0.1
+0.2
carbon source complex media
Yeast Extract 1 x (C)
-0.6
+0.1
+0.0
-0.1
-0.2
carbon source
Sucrose 10 mg/mL (C)
-0.5
-0.1
-0.1
-0.1
+0.1
carbon source
Mucin from porcine stomach type II 2.5 mg/mL (C)
-0.4
-0.1
+0.0
-0.1
-0.1
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
-0.3
-0.0
+0.1
-0.2
-0.1
carbon source
Lentilan from mushroom 2.5 mg/mL (C)
-1.0
+0.0
+0.0
+0.3
+0.1
carbon source
Laminarin from Laminaria digitata 2.5 mg/mL (C)
-0.7
-0.0
+0.2
+0.1
-0.2
carbon source
NAG 10 mg/mL (C)
-0.1
-0.2
-0.2
+0.1
-0.1
carbon source complex media
MRS 1 x (C)
-0.4
-0.1
+0.0
-0.1
+0.1
carbon source
D-Raffinose 10 mg/mL (C)
-0.6
+0.0
+0.0
+0.0
+0.1
carbon source complex media
Yeast Extract 1 x (C)
-0.5
+0.2
+0.0
-0.0
-0.1
carbon source
pectate 2.5 mg/mL (C)
-0.7
+0.1
+0.1
+0.1
+0.0
carbon source complex media
MRS 1 x (C)
-0.4
-0.1
+0.1
+0.0
+0.1
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
+0.3
-0.2
+0.0
+0.0
-0.4
carbon source
Mucin from porcine stomach type III 2.5 mg/mL (C)
-0.4
-0.0
+0.1
-0.0
+0.1
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
-0.5
+0.1
-0.1
+0.0
+0.1
carbon source
D-Xylose 10 mg/mL (C)
-0.5
+0.2
-0.1
-0.0
+0.4
carbon source
.-Glucan from yeast 2.5 mg/mL (C)
-0.5
+0.1
+0.0
+0.0
+0.2
carbon source
Mucin from porcine stomach type II 2.5 mg/mL (C)
-0.3
-0.1
+0.1
+0.1
+0.1
carbon source complex media
GAM 1 x (C)
+0.5
+0.2
-0.0
-0.0
-0.0
carbon source complex media
Columbia 1 x (C)
+0.2
-0.0
+0.2
+0.2
+0.2
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