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Cofit
Protein
Homologs
Fitness for 5 genes in
Parabacteroides merdae CL09T00C40
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HMPREF1078_RS07760 and HMPREF1078_RS07765 are separated by 97 nucleotides
HMPREF1078_RS07765 and HMPREF1078_RS07770 are separated by 530 nucleotides
HMPREF1078_RS07770 and HMPREF1078_RS07775 are separated by 96 nucleotides
HMPREF1078_RS07775 and HMPREF1078_RS07780 are separated by 3 nucleotides
HMPREF1078_RS07760: HMPREF1078_RS07760 - hypothetical protein, at 96,056 to 96,481
_RS07760
HMPREF1078_RS07765: HMPREF1078_RS07765 - phenylacetate--CoA ligase, at 96,579 to 97,880
_RS07765
HMPREF1078_RS07770: HMPREF1078_RS07770 - GH92 family glycosyl hydrolase, at 98,411 to 100,633
_RS07770
HMPREF1078_RS07775: HMPREF1078_RS07775 - twin-arginine translocase subunit TatC, at 100,730 to 101,605
_RS07775
HMPREF1078_RS07780: HMPREF1078_RS07780 - twin-arginine translocase TatA/TatE family subunit, at 101,609 to 101,803
_RS07780
Group
Condition
HMPREF1078
_RS07760
HMPREF1078
_RS07765
HMPREF1078
_RS07770
HMPREF1078
_RS07775
HMPREF1078
_RS07780
carbon source
D-Raffinose 10 mg/mL (C)
-0.4
+0.0
-0.2
-4.3
-5.8
carbon source
.-Glucan from yeast 2.5 mg/mL (C)
-1.3
-0.4
-0.2
-3.2
-5.1
carbon source
Sucrose 10 mg/mL (C)
-0.1
+0.1
-0.1
-4.4
-5.0
carbon source
Lentilan from mushroom 2.5 mg/mL (C)
-0.3
-0.2
-0.0
-3.2
-5.6
carbon source
.-Glucan from yeast 2.5 mg/mL (C)
-0.4
-0.1
-0.0
-3.3
-5.1
carbon source
D-Raffinose 10 mg/mL (C)
-0.1
-0.3
+0.2
-3.7
-4.6
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
+0.1
-0.0
-0.0
-3.5
-4.2
carbon source complex media
Yeast Extract 1 x (C)
+0.2
-0.1
-0.0
-2.7
-4.7
carbon source complex media
Yeast Extract 1 x (C)
-0.2
-0.1
-0.1
-3.2
-3.6
carbon source
Lentilan from mushroom 2.5 mg/mL (C)
+0.5
-0.1
-0.0
-2.6
-3.8
carbon source
D-Maltose 10 mg/mL (C)
+0.1
+0.3
+0.2
-3.0
-3.4
carbon source
Sucrose 10 mg/mL (C)
-0.4
+0.3
+0.0
-2.3
-3.0
carbon source complex media
LB 1 x (C)
-0.0
+0.1
+0.1
-1.7
-3.1
carbon source complex media
marine_broth_2216 1 x (C)
-0.0
+0.0
+0.1
-1.8
-3.0
carbon source
Xylan from corncob 2.5 mg/mL (C)
-0.4
+0.2
-0.1
-2.4
-1.9
carbon source
Xylan from corncob 2.5 mg/mL (C)
+0.1
+0.2
-0.0
-1.9
-3.0
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
-0.6
-0.1
+0.2
-1.6
-2.0
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
+0.0
+0.2
-0.0
-2.1
-2.1
carbon source complex media
LB 1 x (C)
+0.4
-0.0
+0.1
-2.5
-1.9
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
+0.1
+0.2
+0.2
-2.3
-2.1
carbon source
D-Xylose 10 mg/mL (C)
+0.2
+0.2
+0.0
-2.2
-1.8
carbon source complex media
marine_broth_2216 1 x (C)
+0.5
+0.2
+0.1
-2.1
-2.2
carbon source
pectate 2.5 mg/mL (C)
-0.5
-0.0
+0.0
-1.2
-1.6
carbon source
D-Xylose 10 mg/mL (C)
+0.3
+0.3
+0.0
-1.5
-2.3
carbon source
Laminarin from Laminaria digitata 2.5 mg/mL (C)
+0.1
+0.1
+0.0
-2.0
-1.5
carbon source
D-Maltose 10 mg/mL (C)
-0.7
+0.3
-0.5
-0.4
-1.8
carbon source complex media
Brucella 1 x (C)
-0.1
-0.0
+0.1
-1.0
-1.9
carbon source
D-Galactose 10 mg/mL (C)
-0.3
-0.2
-0.0
-1.1
-1.3
carbon source complex media
Columbia 1 x (C)
-0.2
-0.0
+0.1
-1.0
-1.6
carbon source
Mucin from porcine stomach type II 2.5 mg/mL (C)
-0.0
-0.1
+0.0
-0.8
-1.8
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