Fitness for 5 genes in Parabacteroides merdae CL09T00C40

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500 ntHMPREF1078_RS06645 and HMPREF1078_RS06650 are separated by 73 nucleotidesHMPREF1078_RS06650 and HMPREF1078_RS06655 are separated by 285 nucleotidesHMPREF1078_RS06655 and HMPREF1078_RS06660 are separated by 31 nucleotidesHMPREF1078_RS06660 and HMPREF1078_RS06665 are separated by 105 nucleotides HMPREF1078_RS06645: HMPREF1078_RS06645 - RNA polymerase sigma-70 factor, at 718,068 to 718,655 _RS06645 HMPREF1078_RS06650: HMPREF1078_RS06650 - FecR family protein, at 718,729 to 719,706 _RS06650 HMPREF1078_RS06655: HMPREF1078_RS06655 - TonB-dependent receptor, at 719,992 to 723,408 _RS06655 HMPREF1078_RS06660: HMPREF1078_RS06660 - RagB/SusD family nutrient uptake outer membrane protein, at 723,440 to 725,332 _RS06660 HMPREF1078_RS06665: HMPREF1078_RS06665 - metallophosphoesterase, at 725,438 to 726,571 _RS06665
Group Condition HMPREF1078_RS06645 HMPREF1078_RS06650 HMPREF1078_RS06655 HMPREF1078_RS06660 HMPREF1078_RS06665
carbon source .-Glucan from yeast 2.5 mg/mL (C) -0.3 -0.1 +0.1 -0.2 -0.2
carbon source Mucin from porcine stomach type II 2.5 mg/mL (C) -0.2 +0.2 -0.0 -0.2 -0.2
carbon source pectate 2.5 mg/mL (C) -0.2 -0.1 -0.1 -0.2 +0.1
carbon source pectate 2.5 mg/mL (C) -0.5 +0.2 -0.0 -0.1 -0.1
carbon source complex media ABB 1 x (C) -0.3 +0.2 -0.0 -0.0 -0.1
carbon source D-Maltose 10 mg/mL (C) +0.1 -0.3 -0.0 -0.1 -0.0
carbon source complex media LB 1 x (C) -0.4 +0.2 +0.0 -0.0 +0.0
carbon source Dextrin from potato starch 2.5 mg/mL (C) -0.2 +0.2 -0.1 -0.1 -0.0
carbon source Sucrose 10 mg/mL (C) -0.0 -0.2 +0.0 -0.0 +0.2
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) +0.1 -0.1 -0.0 -0.2 +0.1
carbon source complex media GAM 1 x (C) +0.2 -0.0 -0.1 -0.2 +0.1
carbon source D-Mannose 10 mg/mL (C) -0.2 +0.2 +0.1 +0.0 -0.1
carbon source complex media Columbia 1 x (C) -0.2 +0.3 +0.0 -0.0 +0.0
carbon source D-Xylose 10 mg/mL (C) -0.4 +0.2 +0.1 +0.1 +0.1
carbon source Dextrin from potato starch 2.5 mg/mL (C) +0.2 -0.1 -0.1 +0.0 +0.2
carbon source Beta-Lactose 10 mg/mL (C) +0.2 +0.2 +0.0 +0.1 -0.2
carbon source Lentilan from mushroom 2.5 mg/mL (C) +0.1 +0.2 +0.1 -0.1 +0.2
carbon source complex media MRS 1 x (C) -0.1 +0.4 +0.1 +0.1 -0.0
carbon source Mucin from porcine stomach type II 2.5 mg/mL (C) +0.2 +0.3 +0.0 +0.1 -0.1
carbon source Xylan from corncob 2.5 mg/mL (C) +0.1 +0.1 +0.2 -0.0 +0.2
carbon source .-Glucan from yeast 2.5 mg/mL (C) +0.0 +0.3 +0.0 +0.1 +0.0
carbon source D-Glucose 10 mg/mL (C) +0.3 +0.2 +0.1 +0.1 -0.1
carbon source D-Glucose 10 mg/mL (C) +0.1 +0.3 +0.1 +0.1 -0.0
carbon source complex media RCM 1 x (C) +0.2 +0.4 +0.0 -0.1 -0.0
carbon source complex media Brucella 1 x (C) +0.1 +0.2 +0.0 +0.0 +0.2
carbon source D-Maltose 10 mg/mL (C) +0.4 +0.1 +0.1 -0.1 +0.1
carbon source NAG 10 mg/mL (C) +0.1 +0.1 +0.1 +0.2 +0.0
carbon source b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C) -0.1 +0.4 +0.2 +0.3 -0.1
carbon source Mucin from porcine stomach type III 2.5 mg/mL (C) +0.4 +0.2 +0.1 +0.1 -0.0
carbon source Laminarin from Laminaria digitata 2.5 mg/mL (C) +0.3 +0.2 +0.1 +0.2 +0.0
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