Fitness for 5 genes in Parabacteroides merdae CL09T00C40

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500 ntHMPREF1078_RS05965 and HMPREF1078_RS05970 are separated by 16 nucleotidesHMPREF1078_RS05970 and HMPREF1078_RS05975 overlap by 1 nucleotidesHMPREF1078_RS05975 and HMPREF1078_RS05980 are separated by 26 nucleotidesHMPREF1078_RS05980 and HMPREF1078_RS05985 are separated by 419 nucleotides HMPREF1078_RS05965: HMPREF1078_RS05965 - ABC transporter ATP-binding protein, at 530,274 to 530,936 _RS05965 HMPREF1078_RS05970: HMPREF1078_RS05970 - ABC transporter permease, at 530,953 to 533,358 _RS05970 HMPREF1078_RS05975: HMPREF1078_RS05975 - HlyD family efflux transporter periplasmic adaptor subunit, at 533,358 to 534,605 _RS05975 HMPREF1078_RS05980: HMPREF1078_RS05980 - TolC family protein, at 534,632 to 535,993 _RS05980 HMPREF1078_RS05985: HMPREF1078_RS05985 - flavin reductase family protein, at 536,413 to 536,919 _RS05985
Group Condition HMPREF1078_RS05965 HMPREF1078_RS05970 HMPREF1078_RS05975 HMPREF1078_RS05980 HMPREF1078_RS05985
carbon source D-Maltose 10 mg/mL (C) -0.2 -0.3 -0.8 -0.3 -0.1
carbon source D-Xylose 10 mg/mL (C) -0.2 -0.3 -0.4 -0.0 -0.3
carbon source NAG 10 mg/mL (C) -0.0 -0.3 -0.2 -0.2 -0.3
carbon source Sucrose 10 mg/mL (C) -0.7 -0.2 -0.1 -0.2 +0.1
carbon source Xylan from corncob 2.5 mg/mL (C) +0.1 -0.1 -0.1 -0.6 -0.3
carbon source D-Raffinose 10 mg/mL (C) +0.0 -0.5 -0.4 +0.3 -0.3
carbon source D-Xylose 10 mg/mL (C) -0.6 -0.5 +0.1 -0.0 +0.1
carbon source pectate 2.5 mg/mL (C) -0.5 -0.0 +0.1 -0.2 -0.3
carbon source complex media ABB 1 x (C) -0.7 -0.2 +0.3 -0.2 -0.1
carbon source Xylan from corncob 2.5 mg/mL (C) +0.3 -0.3 -0.5 +0.1 -0.4
carbon source D-Mannose 10 mg/mL (C) -0.1 -0.3 -0.1 -0.2 +0.1
carbon source Mucin from porcine stomach type III 2.5 mg/mL (C) -0.2 -0.1 -0.1 -0.3 +0.1
carbon source complex media LB 1 x (C) -0.6 -0.1 +0.4 +0.0 -0.3
carbon source D-Glucose 10 mg/mL (C) +0.2 -0.4 -0.1 +0.2 -0.3
carbon source complex media BHI 1 x (C) +0.2 -0.0 -0.1 -0.7 +0.2
carbon source D-Galactose 10 mg/mL (C) +0.4 -0.2 -0.1 +0.0 -0.3
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) +0.1 -0.1 -0.4 +0.4 -0.2
carbon source complex media Columbia 1 x (C) +0.1 +0.1 -0.2 +0.2 -0.4
carbon source Sucrose 10 mg/mL (C) +0.1 -0.1 -0.0 +0.4 -0.5
carbon source complex media MRS 1 x (C) +0.2 -0.1 +0.2 -0.4 -0.1
carbon source NAG 10 mg/mL (C) +0.3 -0.2 -0.2 +0.2 -0.2
carbon source b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C) -0.1 -0.2 +0.1 +0.4 -0.1
carbon source complex media Yeast Extract 1 x (C) -0.1 +0.0 +0.4 +0.1 -0.2
carbon source complex media LB 1 x (C) -0.2 -0.1 +0.3 +0.3 -0.1
carbon source complex media MRS 1 x (C) +0.0 -0.0 +0.4 -0.2 +0.2
carbon source .-Glucan from yeast 2.5 mg/mL (C) +0.1 -0.1 +0.4 +0.5 -0.5
carbon source Laminarin from Laminaria digitata 2.5 mg/mL (C) +0.1 -0.1 +0.6 -0.2 +0.1
carbon source complex media BHI 1 x (C) +0.4 -0.2 +0.4 -0.2 +0.2
carbon source .-Glucan from yeast 2.5 mg/mL (C) -0.1 -0.0 +0.5 -0.0 +0.3
carbon source complex media GAM 1 x (C) -0.1 +0.2 +0.3 +0.0 +0.4
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