Fitness for 5 genes in Parabacteroides merdae CL09T00C40

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500 ntHMPREF1078_RS04075 and HMPREF1078_RS04080 are separated by 180 nucleotidesHMPREF1078_RS04080 and HMPREF1078_RS04085 are separated by 296 nucleotidesHMPREF1078_RS04085 and HMPREF1078_RS04090 are separated by 22 nucleotidesHMPREF1078_RS04090 and HMPREF1078_RS04095 are separated by 156 nucleotides HMPREF1078_RS04075: HMPREF1078_RS04075 - DUF4974 domain-containing protein, at 27,992 to 29,050 _RS04075 HMPREF1078_RS04080: HMPREF1078_RS04080 - RNA polymerase sigma-70 factor, at 29,231 to 29,785 _RS04080 HMPREF1078_RS04085: HMPREF1078_RS04085 - TonB-dependent receptor, at 30,082 to 32,850 _RS04085 HMPREF1078_RS04090: HMPREF1078_RS04090 - rhomboid family intramembrane serine protease, at 32,873 to 33,472 _RS04090 HMPREF1078_RS04095: HMPREF1078_RS04095 - cardiolipin synthase, at 33,629 to 35,068 _RS04095
Group Condition HMPREF1078_RS04075 HMPREF1078_RS04080 HMPREF1078_RS04085 HMPREF1078_RS04090 HMPREF1078_RS04095
carbon source Sucrose 10 mg/mL (C) -0.0 -0.2 -0.1 +0.1 -3.6
carbon source D-Maltose 10 mg/mL (C) +0.2 +0.2 -0.0 +0.3 -3.2
carbon source .-Glucan from yeast 2.5 mg/mL (C) -0.1 -0.6 +0.1 -0.1 -1.9
carbon source D-Xylose 10 mg/mL (C) +0.1 +0.2 +0.0 +0.0 -2.7
carbon source D-Raffinose 10 mg/mL (C) +0.0 +0.0 -0.1 +0.1 -2.3
carbon source D-Raffinose 10 mg/mL (C) -0.1 +0.1 +0.1 +0.1 -2.4
carbon source Sucrose 10 mg/mL (C) -0.1 -0.1 -0.1 -0.1 -1.7
carbon source NAG 10 mg/mL (C) -0.2 -0.2 -0.4 +0.1 -1.4
carbon source NAG 10 mg/mL (C) -0.3 +0.0 -0.2 +0.1 -1.6
carbon source Mucin from porcine stomach type III 2.5 mg/mL (C) +0.0 -0.2 -0.3 -0.1 -1.2
carbon source Xylan from corncob 2.5 mg/mL (C) +0.1 -0.0 -0.2 -0.0 -1.7
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) -0.0 +0.2 -0.1 +0.2 -2.1
carbon source D-Xylose 10 mg/mL (C) +0.4 +0.1 +0.0 +0.2 -2.4
carbon source D-Glucose 10 mg/mL (C) -0.2 -0.0 -0.0 +0.2 -1.5
carbon source D-Glucose 10 mg/mL (C) -0.1 +0.1 +0.1 +0.1 -1.8
carbon source .-Glucan from yeast 2.5 mg/mL (C) +0.2 -0.0 -0.1 -0.1 -1.6
carbon source Xylan from corncob 2.5 mg/mL (C) +0.1 +0.3 +0.0 -0.1 -1.8
carbon source Mucin from porcine stomach type III 2.5 mg/mL (C) +0.3 -0.2 -0.1 -0.1 -1.4
carbon source Mucin from porcine stomach type II 2.5 mg/mL (C) +0.2 -0.2 -0.2 -0.0 -1.0
carbon source D-Galactose 10 mg/mL (C) +0.1 +0.1 -0.0 +0.3 -1.5
carbon source D-Mannose 10 mg/mL (C) -0.2 +0.0 -0.1 +0.3 -1.1
carbon source D-Galactose 10 mg/mL (C) +0.0 +0.1 +0.1 +0.0 -1.2
carbon source complex media LB 1 x (C) +0.1 +0.1 -0.1 -0.0 -1.0
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) +0.1 -0.2 +0.2 +0.3 -1.2
carbon source complex media ABB 1 x (C) +0.1 -0.1 -0.1 +0.0 -0.8
carbon source Mucin from porcine stomach type II 2.5 mg/mL (C) +0.3 -0.1 +0.1 +0.1 -1.2
carbon source D-Mannose 10 mg/mL (C) -0.1 +0.2 +0.0 -0.0 -0.9
carbon source Laminarin from Laminaria digitata 2.5 mg/mL (C) -0.1 +0.1 +0.1 +0.1 -0.8
carbon source complex media Brucella 1 x (C) +0.2 -0.1 -0.1 +0.2 -0.6
carbon source b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C) +0.3 +0.4 -0.5 -0.2 -0.0
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