Fitness for 5 genes in Parabacteroides merdae CL09T00C40

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500 ntHMPREF1078_RS02570 and HMPREF1078_RS02575 are separated by 762 nucleotidesHMPREF1078_RS02575 and HMPREF1078_RS02580 are separated by 22 nucleotidesHMPREF1078_RS02580 and HMPREF1078_RS02585 are separated by 366 nucleotidesHMPREF1078_RS02585 and HMPREF1078_RS02590 overlap by 35 nucleotides HMPREF1078_RS02570: HMPREF1078_RS02570 - LytTR family DNA-binding domain-containing protein, at 638,289 to 638,681 _RS02570 HMPREF1078_RS02575: HMPREF1078_RS02575 - RagB/SusD family nutrient uptake outer membrane protein, at 639,444 to 641,207 _RS02575 HMPREF1078_RS02580: HMPREF1078_RS02580 - TonB-dependent receptor, at 641,230 to 644,577 _RS02580 HMPREF1078_RS02585: HMPREF1078_RS02585 - type II toxin-antitoxin system RelE/ParE family toxin, at 644,944 to 645,291 _RS02585 HMPREF1078_RS02590: HMPREF1078_RS02590 - helix-turn-helix transcriptional regulator, at 645,257 to 645,562 _RS02590
Group Condition HMPREF1078_RS02570 HMPREF1078_RS02575 HMPREF1078_RS02580 HMPREF1078_RS02585 HMPREF1078_RS02590
carbon source complex media MRS 1 x (C) -2.1 -0.1 -0.1 +0.1 N.D.
carbon source complex media MRS 1 x (C) -1.4 +0.0 +0.0 +0.0 N.D.
carbon source Sucrose 10 mg/mL (C) -0.8 +0.3 +0.0 -0.1 N.D.
carbon source .-Glucan from yeast 2.5 mg/mL (C) -0.2 +0.2 -0.1 -0.4 N.D.
carbon source D-Maltose 10 mg/mL (C) -0.5 +0.1 -0.2 +0.1 N.D.
carbon source complex media Columbia 1 x (C) +0.2 -0.1 -0.0 -0.4 N.D.
carbon source .-Glucan from yeast 2.5 mg/mL (C) -0.4 -0.0 -0.1 +0.3 N.D.
carbon source D-Xylose 10 mg/mL (C) -0.5 +0.2 -0.0 +0.4 N.D.
carbon source NAG 10 mg/mL (C) +0.7 +0.2 -0.2 -0.5 N.D.
carbon source complex media Columbia 1 x (C) +0.4 +0.1 -0.1 -0.2 N.D.
carbon source Mucin from porcine stomach type III 2.5 mg/mL (C) +0.4 +0.1 -0.1 -0.1 N.D.
carbon source b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C) -0.3 +0.2 +0.2 +0.3 N.D.
carbon source Xylan from corncob 2.5 mg/mL (C) -0.6 +0.4 +0.1 +0.5 N.D.
carbon source D-Raffinose 10 mg/mL (C) +0.2 +0.2 -0.1 +0.3 N.D.
carbon source NAG 10 mg/mL (C) +0.2 -0.0 -0.1 +0.5 N.D.
carbon source Mucin from porcine stomach type II 2.5 mg/mL (C) +0.7 -0.1 -0.1 +0.2 N.D.
carbon source Xylan from corncob 2.5 mg/mL (C) -0.2 +0.2 -0.1 +0.6 N.D.
carbon source Mucin from porcine stomach type II 2.5 mg/mL (C) +0.8 -0.0 +0.0 -0.1 N.D.
carbon source Dextrin from potato starch 2.5 mg/mL (C) +0.2 +0.3 +0.0 +0.3 N.D.
carbon source Laminarin from Laminaria digitata 2.5 mg/mL (C) +0.0 +0.1 +0.2 +0.4 N.D.
carbon source complex media LB 1 x (C) +0.4 +0.0 +0.0 +0.3 N.D.
carbon source pectate 2.5 mg/mL (C) +0.2 +0.1 -0.0 +0.5 N.D.
carbon source D-Mannose 10 mg/mL (C) +0.5 +0.2 -0.1 +0.2 N.D.
carbon source complex media Yeast Extract 1 x (C) +0.7 +0.1 -0.0 -0.0 N.D.
carbon source Lentilan from mushroom 2.5 mg/mL (C) +0.4 -0.0 +0.0 +0.5 N.D.
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) +0.3 +0.0 -0.0 +0.6 N.D.
carbon source D-Mannose 10 mg/mL (C) +0.6 +0.1 -0.0 +0.2 N.D.
carbon source D-Galactose 10 mg/mL (C) +0.4 +0.2 +0.0 +0.3 N.D.
carbon source complex media Yeast Extract 1 x (C) +1.1 +0.1 -0.1 +0.1 N.D.
carbon source D-Glucose 10 mg/mL (C) +1.0 +0.1 +0.1 +0.3 N.D.
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