Fitness for 5 genes in Parabacteroides merdae CL09T00C40

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500 ntHMPREF1078_RS01360 and HMPREF1078_RS01365 are separated by 11 nucleotidesHMPREF1078_RS01365 and HMPREF1078_RS01370 are separated by 254 nucleotidesHMPREF1078_RS01370 and HMPREF1078_RS01375 are separated by 76 nucleotidesHMPREF1078_RS01375 and HMPREF1078_RS01380 are separated by 86 nucleotides HMPREF1078_RS01360: HMPREF1078_RS01360 - efflux RND transporter permease subunit, at 349,610 to 352,804 _RS01360 HMPREF1078_RS01365: HMPREF1078_RS01365 - efflux RND transporter periplasmic adaptor subunit, at 352,816 to 353,922 _RS01365 HMPREF1078_RS01370: HMPREF1078_RS01370 - alkaline phosphatase, at 354,177 to 355,871 _RS01370 HMPREF1078_RS01375: HMPREF1078_RS01375 - Xaa-Pro peptidase family protein, at 355,948 to 357,126 _RS01375 HMPREF1078_RS01380: HMPREF1078_RS01380 - M48 family metallopeptidase, at 357,213 to 358,181 _RS01380
Group Condition HMPREF1078_RS01360 HMPREF1078_RS01365 HMPREF1078_RS01370 HMPREF1078_RS01375 HMPREF1078_RS01380
carbon source complex media Columbia 1 x (C) -0.1 +0.1 -0.2 -0.3 -0.3
carbon source complex media GAM 1 x (C) +0.1 +0.2 -0.3 -0.5 -0.1
carbon source complex media BHI 1 x (C) -0.0 -0.1 -0.3 -0.4 +0.1
carbon source b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C) -0.1 -0.5 -0.2 +0.1 +0.1
carbon source Mucin from porcine stomach type III 2.5 mg/mL (C) -0.1 -0.2 -0.2 -0.3 +0.1
carbon source complex media BHI 1 x (C) -0.1 +0.2 -0.3 -0.3 +0.1
carbon source Laminarin from Laminaria digitata 2.5 mg/mL (C) -0.1 -0.1 -0.1 -0.5 +0.3
carbon source complex media RCM 1 x (C) -0.1 +0.1 -0.2 -0.4 +0.1
carbon source D-Glucose 10 mg/mL (C) -0.1 -0.0 +0.2 -0.3 -0.1
carbon source complex media Columbia 1 x (C) -0.0 +0.1 -0.2 -0.2 +0.1
carbon source complex media marine_broth_2216 1 x (C) -0.1 +0.1 -0.1 -0.3 +0.0
carbon source complex media MRS 1 x (C) +0.0 +0.1 +0.1 -0.4 +0.0
carbon source NAG 10 mg/mL (C) +0.0 +0.0 +0.3 -0.4 +0.1
carbon source complex media ABB 1 x (C) +0.0 +0.1 -0.1 -0.2 +0.2
carbon source complex media GAM 1 x (C) +0.1 +0.4 -0.2 -0.7 +0.4
carbon source Dextrin from potato starch 2.5 mg/mL (C) -0.1 -0.2 +0.2 -0.0 +0.1
carbon source .-Glucan from yeast 2.5 mg/mL (C) +0.1 -0.0 -0.2 +0.3 +0.0
carbon source D-Raffinose 10 mg/mL (C) +0.1 +0.1 +0.2 -0.3 +0.1
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) -0.2 +0.1 -0.1 +0.2 +0.3
carbon source D-Galactose 10 mg/mL (C) -0.0 +0.3 -0.0 -0.2 +0.2
carbon source .-Glucan from yeast 2.5 mg/mL (C) -0.1 +0.1 -0.5 +0.2 +0.6
carbon source D-Raffinose 10 mg/mL (C) +0.2 +0.2 +0.3 +0.0 -0.3
carbon source Xylan from corncob 2.5 mg/mL (C) +0.0 +0.1 +0.6 -0.0 -0.2
carbon source complex media Brucella 1 x (C) +0.0 -0.0 +0.3 -0.1 +0.3
carbon source Lentilan from mushroom 2.5 mg/mL (C) +0.0 +0.2 +0.5 -0.1 -0.1
carbon source D-Maltose 10 mg/mL (C) -0.0 +0.2 +0.6 +0.0 +0.1
carbon source Xylan from corncob 2.5 mg/mL (C) +0.1 +0.2 +0.7 +0.2 -0.2
carbon source D-Xylose 10 mg/mL (C) +0.0 +0.0 +0.7 +0.2 +0.2
carbon source D-Maltose 10 mg/mL (C) +0.1 +0.2 +1.0 -0.0 +0.2
carbon source Sucrose 10 mg/mL (C) +0.1 +0.3 +0.7 +0.3 +0.1
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