Fitness for 5 genes in Parabacteroides merdae CL09T00C40

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500 ntHMPREF1078_RS00610 and HMPREF1078_RS00615 are separated by 24 nucleotidesHMPREF1078_RS00615 and HMPREF1078_RS00620 are separated by 650 nucleotidesHMPREF1078_RS00620 and HMPREF1078_RS00625 are separated by 107 nucleotidesHMPREF1078_RS00625 and HMPREF1078_RS00630 are separated by 11 nucleotides HMPREF1078_RS00610: HMPREF1078_RS00610 - RagB/SusD family nutrient uptake outer membrane protein, at 135,730 to 137,424 _RS00610 HMPREF1078_RS00615: HMPREF1078_RS00615 - FN3 domain-containing metallophosphoesterase family protein, at 137,449 to 138,624 _RS00615 HMPREF1078_RS00620: HMPREF1078_RS00620 - FecR family protein, at 139,275 to 140,240 _RS00620 HMPREF1078_RS00625: HMPREF1078_RS00625 - TonB-dependent receptor, at 140,348 to 143,860 _RS00625 HMPREF1078_RS00630: HMPREF1078_RS00630 - RagB/SusD family nutrient uptake outer membrane protein, at 143,872 to 145,653 _RS00630
Group Condition HMPREF1078_RS00610 HMPREF1078_RS00615 HMPREF1078_RS00620 HMPREF1078_RS00625 HMPREF1078_RS00630
carbon source complex media marine_broth_2216 1 x (C) -0.1 -0.2 +0.1 -0.1 -0.1
carbon source complex media ABB 1 x (C) -0.1 -0.0 -0.2 -0.0 -0.1
carbon source complex media marine_broth_2216 1 x (C) -0.1 -0.1 -0.1 -0.0 -0.1
carbon source pectate 2.5 mg/mL (C) -0.1 -0.2 +0.1 -0.0 -0.0
carbon source Dextrin from potato starch 2.5 mg/mL (C) -0.0 -0.1 -0.1 +0.2 -0.0
carbon source D-Maltose 10 mg/mL (C) -0.3 -0.0 +0.2 +0.2 -0.1
carbon source .-Glucan from yeast 2.5 mg/mL (C) +0.2 -0.3 +0.2 +0.1 -0.1
carbon source pectate 2.5 mg/mL (C) +0.1 -0.1 +0.0 +0.1 +0.0
carbon source D-Maltose 10 mg/mL (C) -0.1 +0.4 -0.2 +0.1 +0.1
carbon source Mucin from porcine stomach type II 2.5 mg/mL (C) +0.1 -0.1 +0.1 +0.2 -0.1
carbon source Mucin from porcine stomach type II 2.5 mg/mL (C) +0.1 -0.1 +0.2 -0.0 +0.1
carbon source complex media RCM 1 x (C) +0.2 +0.1 -0.1 +0.0 +0.1
carbon source D-Galactose 10 mg/mL (C) +0.0 -0.0 +0.2 +0.1 +0.1
carbon source complex media Brucella 1 x (C) +0.1 +0.0 +0.2 +0.0 +0.0
carbon source complex media Yeast Extract 1 x (C) +0.2 -0.0 +0.1 +0.1 +0.1
carbon source D-Xylose 10 mg/mL (C) +0.1 -0.1 +0.1 +0.2 +0.1
carbon source Sucrose 10 mg/mL (C) -0.1 +0.2 +0.0 +0.2 +0.2
carbon source complex media GAM 1 x (C) +0.1 +0.1 +0.1 +0.1 +0.1
carbon source NAG 10 mg/mL (C) -0.1 +0.1 +0.1 +0.2 +0.2
carbon source Mucin from porcine stomach type III 2.5 mg/mL (C) +0.1 +0.1 +0.2 +0.1 +0.1
carbon source Lentilan from mushroom 2.5 mg/mL (C) +0.2 -0.0 +0.1 +0.1 +0.2
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) +0.1 +0.3 +0.1 +0.1 -0.0
carbon source Dextrin from potato starch 2.5 mg/mL (C) +0.2 +0.1 -0.0 +0.3 +0.1
carbon source D-Xylose 10 mg/mL (C) +0.1 +0.2 +0.2 +0.2 +0.1
carbon source NAG 10 mg/mL (C) +0.0 +0.1 +0.2 +0.2 +0.2
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) +0.2 +0.1 +0.3 +0.1 +0.1
carbon source .-Glucan from yeast 2.5 mg/mL (C) +0.4 -0.0 +0.3 +0.1 +0.1
carbon source b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C) +0.3 +0.3 +0.2 +0.1 +0.0
carbon source Xylan from corncob 2.5 mg/mL (C) +0.1 +0.3 +0.1 +0.3 +0.2
carbon source Laminarin from Laminaria digitata 2.5 mg/mL (C) +0.3 +0.2 +0.3 +0.3 +0.3
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