Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS00065	HMPREF1058_RS00060	HMPREF1058_RS21730	HMPREF1058_RS00055	HMPREF1058_RS00050
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.5	-0.4	-0.9	-0.0	-0.1
carbon source	polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)	-0.4	-0.2	-0.9	-0.2	-0.1
carbon source	Dextran 5 mg/ml (C)	-0.6	-0.3	-0.3	-0.1	-0.2
carbon source	D-Glucose 5 mg/ml (C)	-0.1	-0.2	-0.4	-0.0	-1.0
carbon source	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)	+0.1	-0.3	-0.1	-0.2	-0.9
carbon source	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)	-0.1	-0.2	-1.0	+0.0	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3	+0.3	+0.0	-0.1	-0.4	-0.8
carbon source	D-Glucose 5 mg/ml (C)	-0.2	-0.1	+0.5	-0.2	-0.9
carbon source	Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)	+0.1	+0.1	+0.5	-0.0	-1.3
carbon source	Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)	+0.3	+0.1	+0.4	-0.1	-1.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8	+0.1	+0.4	+0.5	-0.3	-1.0
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2	+0.2	-0.3	+0.6	-0.4	-0.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7	+0.3	+0.4	+0.6	-0.4	-1.0
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3	+0.2	+0.3	+0.6	-0.2	-0.8
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4	+0.3	+0.3	+0.5	-0.1	-0.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5	+0.4	+0.3	+0.8	-0.3	-0.8
carbon source	D-Mannose 20 mM (C)	-0.1	-0.2	+1.0	-0.0	-0.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6	+0.3	+0.4	+0.9	-0.2	-0.9
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2	+0.3	+0.1	+0.9	-0.0	-0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2	+0.3	+0.2	+1.1	-0.5	-0.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3	+0.2	+0.3	+0.6	-0.4	-0.1
carbon source	Sucrose 20 mM (C)	+0.0	-0.3	+1.1	-0.1	+0.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1	+0.3	-0.2	+0.8	+0.2	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3	+0.3	+0.3	+1.3	-0.5	-0.5
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.4	-0.4	+1.6	-0.1	-0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6	+0.2	+0.6	+0.5	+0.1	-0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5	+0.1	+0.4	+0.9	-0.1	+0.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7	+0.2	+0.6	+0.6	+0.2	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6	+0.3	+0.5	+0.7	+0.1	+0.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6	+0.1	+0.5	+0.9	+0.2	+0.2