Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS03040	HMPREF1058_RS21675	HMPREF1058_RS21680	HMPREF1058_RS03035	HMPREF1058_RS03030
carbon source	D-Glucose (C)	-0.2	-0.3	-0.7	-0.2	-0.4
carbon source	D-Galactose 20 mM (C)	-0.4	-0.3	-0.9	+0.1	-0.2
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	-0.1	+0.0	-0.1	-1.6	+0.2
carbon source	Polygalacturonic 5 mg/ml (C)	-0.4	-0.1	-1.1	-0.0	+0.2
carbon source	Galactose 1-phosphate dipotassium salt (C)	-0.1	+0.2	-0.7	-0.5	-0.4
carbon source	Polygalacturonic 5 mg/ml (C)	-0.4	-0.2	-0.7	+0.1	+0.1
carbon source	D-Glucose 5 mg/ml (C)	-0.4	-0.4	-0.3	+0.3	-0.2
carbon source	Polygalacturonic ultrapure 5mg/ml (C)	-0.3	-0.2	-0.6	+0.1	+0.1
carbon source	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)	-0.4	-0.3	-0.2	+0.4	-0.2
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.7	+0.2	+0.2	+0.3	-0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6	+0.1	+0.0	-0.7	+0.4	+0.3
carbon source	D-Galacturonic Acid 20 mM (C)	-0.4	-0.0	-0.3	+0.8	+0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1	-0.2	-0.0	-0.3	+0.8	+0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6	+0.6	+0.2	-0.3	-0.2	+0.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2	+0.6	+0.2	-0.1	-0.4	+0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5	+0.5	-0.1	-0.2	+0.2	+0.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6	+0.6	+0.2	-0.1	-0.2	+0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6	+0.8	-0.0	-0.3	+0.1	+0.3
carbon source	Dextran 5 mg/ml (C)	-0.1	-0.2	+0.2	+0.8	+0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1	+0.4	-0.1	-0.2	+0.6	+0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2	+0.3	+0.2	-0.2	+0.3	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3	+0.4	+0.2	-0.2	+0.5	+0.3
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	-0.2	-0.1	+0.5	+0.6	+0.5
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	+0.1	-0.3	+0.3	+0.8	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4	+0.8	+0.1	-0.1	+0.4	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7	+0.2	+0.8	-0.0	+0.4	+0.0
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3	+0.7	-0.0	+0.3	+0.1	+0.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2	+0.4	-0.2	+0.1	+0.9	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9	+0.5	+0.5	+0.5	+0.5	+0.1
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.0	+0.5	+1.2	+0.2	+0.5