Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS09705 and HMPREF1058_RS09700 are separated by 81 nucleotidesHMPREF1058_RS09700 and HMPREF1058_RS21625 are separated by 286 nucleotidesHMPREF1058_RS21625 and HMPREF1058_RS09695 are separated by 1 nucleotidesHMPREF1058_RS09695 and HMPREF1058_RS09690 are separated by 4 nucleotides HMPREF1058_RS09705: HMPREF1058_RS09705 - lipopolysaccharide biosynthesis protein, at 814,365 to 815,801 _RS09705 HMPREF1058_RS09700: HMPREF1058_RS09700 - methionine--tRNA ligase, at 815,883 to 817,925 _RS09700 HMPREF1058_RS21625: HMPREF1058_RS21625 - hypothetical protein, at 818,212 to 818,379 _RS21625 HMPREF1058_RS09695: HMPREF1058_RS09695 - YifB family Mg chelatase-like AAA ATPase, at 818,381 to 819,919 _RS09695 HMPREF1058_RS09690: HMPREF1058_RS09690 - DUF4369 domain-containing protein, at 819,924 to 820,991 _RS09690
Group Condition HMPREF1058_RS09705 HMPREF1058_RS09700 HMPREF1058_RS21625 HMPREF1058_RS09695 HMPREF1058_RS09690
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -1.4 -2.1 -0.0 -1.6
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -1.9 -0.9 -0.2 -1.6
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -3.3 -0.9 +0.2 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 N.D. -1.0 -1.1 -0.1 -1.2
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) N.D. -1.3 -0.3 +0.1 -1.7
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -1.9 -0.1 -0.0 -1.2
carbon source D-Glucose 5 mg/ml (C) N.D. -0.9 -0.8 +0.0 -1.4
carbon source Polygalacturonic 5 mg/ml (C) N.D. -0.8 -0.9 +0.3 -1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 N.D. -1.0 -1.0 -0.1 -0.9
carbon source D-Glucose 5 mg/ml (C) N.D. -1.3 -0.5 +0.1 -1.2
carbon source a-Cyclodextrin (C) N.D. -1.5 -0.1 +0.1 -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 N.D. -2.5 +0.9 -0.0 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 N.D. -2.4 +1.0 -0.1 -1.3
carbon source Polygalacturonic ultrapure 5mg/ml (C) N.D. -0.8 -0.2 +0.2 -1.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3 N.D. -2.5 +0.5 -0.2 -0.3
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) N.D. -3.0 +1.1 +0.1 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 N.D. -1.8 +0.7 +0.0 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 N.D. -2.3 +0.6 +0.0 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 N.D. -2.5 +1.0 -0.0 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 N.D. -2.0 +0.8 -0.1 -0.7
carbon source D-Galactose 20 mM (C) N.D. +1.0 -1.7 -0.2 -0.8
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. -0.4 +1.1 -0.2 -2.1
carbon source beta-Cyclodextrin 5 mg/ml (C) N.D. +0.6 -0.8 +0.1 -1.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 N.D. -2.0 +0.9 +0.1 -0.2
carbon source (+)-Arabinogalactan 5 mg/ml (C) N.D. -1.4 +1.2 +0.2 -1.0
carbon source D-Glucose (C) N.D. +1.7 -0.4 +0.2 -2.2
carbon source D-Glucose (C) N.D. +2.2 +0.0 +0.2 -2.7
carbon source D-Mannose (C) N.D. +2.0 -0.8 +0.1 -1.1
carbon source D-Mannose (C) N.D. +2.1 +0.1 +0.0 -1.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 N.D. -0.3 +2.3 -0.1 -1.0
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