Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS04540	HMPREF1058_RS04530	HMPREF1058_RS21520	HMPREF1058_RS04525	HMPREF1058_RS04520
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	N.D.	-3.8	-4.5	+0.4	-4.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8	N.D.	-2.6	-3.2	-0.5	-3.8
carbon source	Dextran 5 mg/ml (C)	N.D.	-0.6	-3.8	-1.3	-2.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6	N.D.	-1.2	-3.5	-0.2	-3.2
carbon source	beta-Cyclodextrin 5 mg/ml (C)	N.D.	-3.7	-3.4	-0.3	-0.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2	N.D.	-1.8	-3.4	-0.0	-2.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7	N.D.	-2.3	-3.4	-0.0	-1.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7	N.D.	-0.2	-2.7	-1.2	-3.0
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3	N.D.	-0.6	-3.5	+0.3	-3.3
carbon source	Beta-Lactose 20 mM (C)	N.D.	-4.3	-0.5	-0.3	-1.8
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	N.D.	-3.6	-0.9	-0.6	-1.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6	N.D.	-1.2	-3.3	-0.8	-0.7
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6	N.D.	-0.2	-2.6	-1.1	-2.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9	N.D.	-0.2	-2.6	+0.1	-3.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7	N.D.	+0.8	-3.8	-0.2	-2.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5	N.D.	-1.8	-3.5	+0.4	-0.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7	N.D.	+0.6	-3.1	-1.0	-1.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9	N.D.	+0.5	-3.1	-0.4	-1.9
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day6	N.D.	+1.3	-3.9	-0.8	-1.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day6	N.D.	+0.7	-3.0	-0.7	-1.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1	N.D.	-1.7	-3.4	+1.0	-0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2	N.D.	-1.8	-3.4	+1.0	-0.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7	N.D.	+1.1	-2.7	-0.6	-2.0
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2	N.D.	-1.5	-3.3	+0.0	+1.2
carbon source	D-Galactose (C)	N.D.	-2.9	-2.2	+1.0	+0.6
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3	N.D.	+1.7	-2.5	+0.6	-2.3
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	N.D.	-3.4	+2.4	-0.6	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1	N.D.	+2.2	-3.4	+0.6	+0.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1	N.D.	+2.1	-3.3	+1.3	+0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3	N.D.	+1.9	-3.4	+0.5	+1.6