Fitness for 3 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS21480 and HMPREF1058_RS06105 are separated by 803 nucleotidesHMPREF1058_RS06105 and HMPREF1058_RS06100 overlap by 17 nucleotides HMPREF1058_RS21480: HMPREF1058_RS21480 - hypothetical protein, at 602 to 826 _RS21480 HMPREF1058_RS06105: HMPREF1058_RS06105 - ABC transporter permease, at 1,630 to 2,820 _RS06105 HMPREF1058_RS06100: HMPREF1058_RS06100 - ABC transporter permease, at 2,804 to 3,976 _RS06100
Group Condition HMPREF1058_RS21480 HMPREF1058_RS06105 HMPREF1058_RS06100
carbon source Sucrose 20 mM (C) -1.4 -1.2 -0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 -2.1 -0.3 -0.8
carbon source Polygalacturonic 5 mg/ml (C) -3.1 -0.3 +0.3
carbon source D-Glucose (C) -1.8 +0.1 -0.6
carbon source Polygalacturonic 5 mg/ml (C) -0.8 -0.8 -0.6
carbon source Pectic galactan from potato 5mg/ml (C) -1.8 -0.2 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 -1.9 -0.1 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 -0.9 -0.4 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -1.4 -0.0 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 -0.9 -0.3 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -1.5 -0.2 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 -0.9 -0.3 -0.4
carbon source D-Glucose (C) -1.2 -0.4 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.7 -0.4 -0.5
carbon source Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) -0.7 -0.4 -0.4
carbon source Dextran 5 mg/ml (C) -1.2 -0.1 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 -0.9 -0.2 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 -1.2 +0.0 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 -1.5 -0.0 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.7 -0.2 -0.6
carbon source (+)-Arabinogalactan 5 mg/ml (C) -1.6 -0.6 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3 -1.3 -0.1 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 -1.5 +0.1 +0.3
carbon source (+)-Arabinogalactan 5 mg/ml (C) -1.3 -0.5 +0.8
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.0 -1.3 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 +0.4 -0.5 -0.6
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.5 -0.1 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day3 +0.7 -0.5 -0.5
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.9 -1.1 -1.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day6 +0.8 -0.3 -0.5
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