Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS06470	HMPREF1058_RS20890	HMPREF1058_RS21475	HMPREF1058_RS06460	HMPREF1058_RS06455
carbon source	D-Mannose (C)	+0.2	-0.3	-1.9	-2.4	-1.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1	-1.3	-1.4	-0.1	-0.2	-1.2
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	+0.1	-0.9	-3.1	-0.6	+0.3
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.4	-0.7	-0.5	-1.6	-0.8
carbon source	Mannan from Saccharomyces cerevisiae 5 mg/ml (C)	+0.2	-0.6	-1.0	-1.8	-0.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1	-0.0	-0.4	-3.3	-0.2	+0.1
carbon source	D-Mannose 20 mM (C)	-0.2	-0.3	-1.5	-1.0	-0.6
carbon source	D-Galactose 20 mM (C)	+0.6	-0.4	-2.0	-1.8	+0.3
carbon source	NAG (C)	+0.1	-0.4	+0.1	-2.5	-0.5
carbon source	D-Galactose (C)	+0.2	-1.1	+0.3	-1.3	-0.7
carbon source	D-Galactose 20 mM (C)	-0.0	-0.0	-0.8	-2.2	+0.6
carbon source	D-Mannose 2.5 mg/ml (C)	+0.1	-0.3	+0.5	-1.2	-1.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7	+0.8	-0.8	-0.6	-1.2	-0.6
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6	-0.3	-1.4	+1.1	-0.8	-0.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5	+0.1	-0.9	+1.5	-2.5	+0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9	-0.4	-0.9	+1.2	-0.5	-0.7
carbon source	Amylose from potato 5 mg/ml (C)	-0.2	-0.4	+2.2	-2.9	+0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4	+0.1	-0.6	+1.4	-1.6	-0.3
carbon source	Sucrose 20 mM (C)	-0.1	-0.6	-2.2	+0.9	+1.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4	+0.0	-1.2	+1.4	-0.5	-0.6
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.1	-0.3	+1.7	-1.6	-0.4
carbon source	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)	+0.4	+0.6	+1.4	-2.1	-0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4	-0.2	-1.1	+2.2	-0.8	-0.3
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	-0.7	+0.2	+1.3	-1.4	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7	+0.8	-0.6	+1.2	-2.0	+0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6	+0.6	-0.6	+1.6	-1.6	+0.2
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	+1.0	+0.9	+2.4	-2.2	-0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7	+0.0	-0.6	+2.1	+0.8	-0.6
nitrogen source	L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen	+0.0	-0.0	+3.3	-0.4	-0.9
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+1.1	-0.0	+2.0	-0.4	+0.7