Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS05315	HMPREF1058_RS21350	HMPREF1058_RS21355	HMPREF1058_RS05300	HMPREF1058_RS05295
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	N.D.	-0.1	-0.9	-2.3	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2	N.D.	-0.6	+0.0	-2.6	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1	N.D.	-0.2	+0.3	-3.1	+0.1
carbon source	Arabinan from sugar beet 5mg/ml (C)	N.D.	-0.9	-0.3	-0.9	-0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6	N.D.	-0.4	-0.1	-1.6	-0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5	N.D.	-0.3	-0.2	-1.6	-0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2	N.D.	-0.1	-0.4	-1.7	-0.1
carbon source	Pectin from apple; autoclaved 2.5 mg/ml (C)	N.D.	+0.1	-0.2	-2.0	-0.0
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1	N.D.	+0.1	-0.0	-2.2	+0.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day3	N.D.	-0.4	-0.4	-1.0	-0.2
carbon source	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)	N.D.	+0.0	-0.3	-1.5	-0.3
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	N.D.	+0.0	-0.8	-1.1	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7	N.D.	+0.0	-0.8	-0.6	-0.7
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3	N.D.	+0.0	+0.2	-2.2	+0.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4	N.D.	-0.2	+0.5	-2.1	-0.1
carbon source	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)	N.D.	+0.2	-0.7	-1.2	-0.1
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen	N.D.	+0.2	-0.0	-1.8	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8	N.D.	+0.2	+0.1	-1.6	-0.1
carbon source	Polygalacturonic 5 mg/ml (C)	N.D.	-0.0	+0.5	-1.2	-0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5	N.D.	-0.2	+0.7	-1.2	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6	N.D.	-0.1	+0.7	-1.1	-0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9	N.D.	-0.3	-0.5	+0.9	-0.3
carbon source	D-Galactose 20 mM (C)	N.D.	+0.4	+0.7	-1.1	+0.0
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7	N.D.	+0.4	+0.6	-1.1	+0.1
carbon source	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)	N.D.	-0.5	-0.4	+1.4	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9	N.D.	-0.3	+0.7	+0.7	-0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1	N.D.	-0.8	-0.1	+1.7	+0.0
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9	N.D.	-0.4	+1.2	+0.7	-0.4
carbon source	D-Mannose 20 mM (C)	N.D.	+0.2	+0.7	+1.1	-0.1
carbon source	D-Galactose (C)	N.D.	+0.4	+0.3	+1.5	-0.1