Fitness for 3 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS01045 and HMPREF1058_RS01040 are separated by 1 nucleotidesHMPREF1058_RS01040 and HMPREF1058_RS21250 are separated by 14 nucleotides HMPREF1058_RS01045: HMPREF1058_RS01045 - hypothetical protein, at 223,640 to 224,137 _RS01045 HMPREF1058_RS01040: HMPREF1058_RS01040 - hypothetical protein, at 224,139 to 224,411 _RS01040 HMPREF1058_RS21250: HMPREF1058_RS21250 - hypothetical protein, at 224,426 to 225,064 _RS21250
Group Condition HMPREF1058_RS01045 HMPREF1058_RS01040 HMPREF1058_RS21250
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -0.5 -1.5 +0.2
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.1 -1.1 -0.6
carbon source D-Galactose 20 mM (C) -1.0 -0.7 -0.0
carbon source D-Mannose 20 mM (C) -0.7 -0.5 -0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) -0.3 -1.3 +0.1
carbon source D-Galactose 20 mM (C) -0.2 -1.0 -0.3
carbon source D-Glucose 20 mM (C) -0.0 -1.1 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day5 -0.2 -1.0 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day6 -0.4 -1.0 +0.1
carbon source D-Glucose-6-Phosphate 20 mM (C) -0.2 -0.6 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.2 -1.0 +0.0
carbon source D-Maltose 20 mM (C) +0.3 -0.8 -0.6
carbon source beta-Cyclodextrin 5 mg/ml (C) -0.3 -0.6 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 -1.0 -0.5 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 -0.9 -0.2 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.3 -0.7 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 -0.4 -0.6 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 -0.0 -0.9 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 -0.3 -0.8 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.3 -0.7 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 +0.1 -0.8 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.2 -0.7 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 +0.3 -0.7 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +0.4 -0.7 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.5 +0.2 +0.7
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.2 +0.0 +1.1
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.5 -0.0 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 +0.2 +0.4 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +0.1 +0.7 +0.6
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.5 +0.6 +0.5
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HMPREF1058_RS01045
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HMPREF1058_RS01040
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HMPREF1058_RS21250