Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS04175 and HMPREF1058_RS04170 are separated by 33 nucleotidesHMPREF1058_RS04170 and HMPREF1058_RS21070 are separated by 26 nucleotidesHMPREF1058_RS21070 and HMPREF1058_RS04165 are separated by 228 nucleotidesHMPREF1058_RS04165 and HMPREF1058_RS21530 are separated by 228 nucleotides HMPREF1058_RS04175: HMPREF1058_RS04175 - potassium-transporting ATPase subunit KdpB, at 100,489 to 102,522 _RS04175 HMPREF1058_RS04170: HMPREF1058_RS04170 - potassium-transporting ATPase subunit KdpA, at 102,556 to 104,262 _RS04170 HMPREF1058_RS21070: HMPREF1058_RS21070 - potassium-transporting ATPase subunit F, at 104,289 to 104,408 _RS21070 HMPREF1058_RS04165: HMPREF1058_RS04165 - O-acetyl-ADP-ribose deacetylase, at 104,637 to 105,263 _RS04165 HMPREF1058_RS21530: HMPREF1058_RS21530 - left-handed beta-roll domain-containing protein, at 105,492 to 105,614 _RS21530
Group Condition HMPREF1058_RS04175 HMPREF1058_RS04170 HMPREF1058_RS21070 HMPREF1058_RS04165 HMPREF1058_RS21530
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.4 -0.5 -1.7 -0.0 N.D.
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) +0.0 -0.4 -1.8 -0.3 N.D.
carbon source Dextran 5 mg/ml (C) -0.6 -0.2 -1.5 +0.1 N.D.
carbon source D-Glucose (C) -0.5 -0.2 -0.9 -0.6 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 -0.0 -0.7 -0.7 -0.7 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.7 -0.4 -0.3 -0.4 N.D.
carbon source Dextrin from potato starch; autoclaved 2.5 mg/ml (C) -0.1 -0.2 -1.5 -0.0 N.D.
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.1 -0.6 -0.6 -0.5 N.D.
carbon source Polygalacturonic 5 mg/ml (C) +0.2 -0.9 -1.2 +0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -0.1 -1.2 -0.8 +0.5 N.D.
carbon source Beta-Lactose 20 mM (C) +0.1 -0.2 -1.3 -0.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 -0.5 -0.1 -1.0 +0.2 N.D.
carbon source Galactose 1-phosphate dipotassium salt (C) -0.2 -0.2 -1.1 +0.1 N.D.
carbon source NAG 20 mM (C) +0.0 -0.2 -1.3 +0.2 N.D.
carbon source Sucrose 20 mM (C) -0.6 +0.3 -1.0 +0.2 N.D.
carbon source a-Cyclodextrin (C) -0.3 -0.5 -0.6 +0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1 -0.0 -0.4 -0.7 +0.3 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.4 +0.3 -1.5 -0.1 N.D.
carbon source D-Glucose 5 mg/ml (C) -0.2 -0.4 -0.6 +0.5 N.D.
carbon source Polygalacturonic 5 mg/ml (C) +0.1 -0.4 -0.9 +0.7 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 +0.4 -0.3 -0.7 +0.4 N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.6 -0.4 +1.2 -0.1 N.D.
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.1 +0.7 -0.9 +0.5 N.D.
carbon source D-Fructose 20 mM (C) +0.0 +0.6 -0.6 +0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 -0.4 -0.1 +0.4 +0.7 N.D.
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) +0.4 +0.4 -0.5 +0.6 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.5 -0.5 +0.8 +0.2 N.D.
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.1 +0.4 -0.6 +1.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 -0.1 +0.2 +0.3 +0.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 -0.3 -0.1 +0.6 +1.2 N.D.
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HMPREF1058_RS04175
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HMPREF1058_RS04170
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HMPREF1058_RS04165
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HMPREF1058_RS21530
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