Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS21045 and HMPREF1058_RS04435 are separated by 157 nucleotidesHMPREF1058_RS04435 and HMPREF1058_RS21050 are separated by 253 nucleotidesHMPREF1058_RS21050 and HMPREF1058_RS04430 are separated by 124 nucleotidesHMPREF1058_RS04430 and HMPREF1058_RS04425 are separated by 912 nucleotides HMPREF1058_RS21045: HMPREF1058_RS21045 - hypothetical protein, at 36,125 to 36,364 _RS21045 HMPREF1058_RS04435: HMPREF1058_RS04435 - hypothetical protein, at 36,522 to 36,779 _RS04435 HMPREF1058_RS21050: HMPREF1058_RS21050 - transposase, at 37,033 to 37,196 _RS21050 HMPREF1058_RS04430: HMPREF1058_RS04430 - alpha-1,2-fucosyltransferase, at 37,321 to 38,166 _RS04430 HMPREF1058_RS04425: HMPREF1058_RS04425 - mechanosensitive ion channel, at 39,079 to 39,924 _RS04425
Group Condition HMPREF1058_RS21045 HMPREF1058_RS04435 HMPREF1058_RS21050 HMPREF1058_RS04430 HMPREF1058_RS04425
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.4 -4.3 +0.1 +0.7 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.6 +0.8 -2.6 -1.1 -0.3
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.8 +0.1 -2.0 +0.5 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 +0.6 +0.0 -2.8 +0.1 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -1.0 +1.4 -0.6 -1.1 -0.5
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.8 -1.6 -0.3 +1.4 -0.1
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) -1.2 +0.4 +0.6 +0.9 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.5 -1.9 +0.4 +1.1 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 +0.2 -1.3 +0.5 +1.2 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 +0.6 -2.1 +0.3 +1.9 +0.2
carbon source Polygalacturonic 5 mg/ml (C) -0.9 -0.4 +1.4 +1.1 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.9 -1.4 -0.7 +1.8 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.8 +1.4 -0.4 -0.9 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.4 -1.2 +0.6 +1.1 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.9 -1.8 +0.4 +1.9 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +0.2 -1.6 +0.5 +2.0 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 +0.3 -0.9 +0.4 +1.5 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 +0.3 -0.8 +0.7 +1.2 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +0.4 -1.6 +0.0 +2.4 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 +0.7 +0.7 +1.3 -0.2 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 +0.2 -1.4 +0.8 +1.8 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 +0.8 -1.3 +0.5 +1.7 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.8 -0.9 -0.1 +2.0 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 +0.4 -0.6 +0.4 +1.3 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 +0.8 -0.6 +0.6 +1.3 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +1.4 -0.4 -0.2 +1.9 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 +0.9 -0.4 +0.6 +1.7 +1.0
carbon source Pectin from citrus peel (C) +0.7 +0.1 -0.1 +3.3 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +1.5 -0.6 -0.2 +2.2 +1.8
carbon source Pectin from citrus peel (C) +0.9 +0.3 -0.3 +3.7 +0.4
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