Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS05345	HMPREF1058_RS05340	HMPREF1058_RS20985	HMPREF1058_RS05335	HMPREF1058_RS05330
carbon source	Dextran 5 mg/ml (C)	-0.6	-0.3	-3.5	+0.1	-0.4
carbon source	Dextran 5 mg/ml (C)	+0.4	-0.3	-3.5	-0.0	-0.9
carbon source	D-Mannose (C)	-0.1	+0.0	-2.2	-0.1	-0.4
carbon source	D-Galactose 20 mM (C)	+0.0	-0.6	-1.4	-0.1	-0.6
carbon source	D-Galactose (C)	+0.3	+0.2	-1.8	-0.3	-1.0
carbon source	D-Glucose (C)	-0.7	+0.8	+0.1	-0.9	-1.3
carbon source	D-Mannose (C)	+0.3	+0.4	-1.4	-0.3	-0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9	-0.0	+0.7	-1.4	-0.4	-0.7
carbon source	D-Glucose (C)	-0.4	-1.1	+0.9	-0.3	-0.4
carbon source	Galactose 1-phosphate dipotassium salt (C)	-0.5	+0.9	-1.2	-0.1	-0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2	+0.9	+0.8	-3.1	+0.0	+0.2
carbon source	Pectin from citrus peel (C)	-0.4	+0.9	-1.0	-0.0	-0.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1	+1.5	+0.0	-3.0	-0.1	+0.6
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1	+0.7	-0.4	+0.4	-0.4	-0.8
carbon source	D-Galactose 20 mM (C)	-0.1	-0.4	+1.7	-0.1	-0.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1	+1.2	+0.6	-1.1	-0.3	+0.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2	+1.2	-0.7	+0.6	-0.4	+0.1
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.3	+0.7	+1.1	-0.6	-0.5
carbon source	(+)-Arabinogalactan; filtered 2.5 mg/ml (C)	-0.4	-0.3	+2.3	-0.3	-0.2
carbon source	Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)	+0.2	+0.7	+0.9	-0.4	-0.4
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen	+0.3	+0.6	+1.1	-0.2	-0.7
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.0	+1.4	+1.7	-0.9	-0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4	+0.9	+0.4	+0.8	-0.2	-0.4
carbon source	Arabinan from sugar beet 5mg/ml (C)	-0.1	-0.1	+2.2	-0.3	-0.1
carbon source	Dextrin from potato starch 5 mg/ml (C)	+0.4	+0.8	+1.3	-0.2	-0.4
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	-0.5	+0.4	+3.2	-0.5	-0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1	+0.7	+0.8	+1.2	-0.1	-0.3
carbon source	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)	-0.1	+0.8	+2.0	-0.0	-0.4
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	-0.1	-0.2	+2.6	-0.3	+0.3
carbon source	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)	+0.2	-0.1	+2.5	-0.3	+0.1