Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS08795	HMPREF1058_RS08790	HMPREF1058_RS20790	HMPREF1058_RS08785	HMPREF1058_RS08780
carbon source	D-Glucose 5 mg/ml (C)	+0.0	+0.2	-1.1	-1.5	-1.7
carbon source	a-Cyclodextrin (C)	-0.1	-0.3	-0.9	-1.5	-1.2
carbon source	D-Glucose 5 mg/ml (C)	+0.1	-0.0	-0.5	-1.6	-1.7
carbon source	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)	-0.1	-0.1	-1.0	-1.2	-1.2
carbon source	a-Cyclodextrin (C)	+0.1	-0.1	-0.7	-1.3	-1.5
carbon source	D-Galactose 20 mM (C)	-0.1	+0.2	-2.5	-0.2	-0.7
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.1	-0.0	-2.1	-0.3	-0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1	+0.6	-0.0	-3.4	+0.0	-0.3
carbon source	D-Galactose 2.5 mg/ml (C)	+0.0	-0.2	-1.2	-0.7	-1.0
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.7	-0.0	-0.7	-0.7	-1.0
carbon source	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)	+0.0	+0.1	-1.1	-1.0	-1.1
carbon source	D-Glucosamine 6-phosphate (C)	-0.2	-0.1	-0.6	-1.0	-1.0
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	-0.1	-0.1	-1.4	-0.4	-0.5
carbon source	D-Galactose 2.5 mg/ml (C)	-0.0	-0.0	-0.5	-0.9	-1.1
carbon source	D-Xylose 2.5 mg/ml (C)	-0.0	+0.1	-0.4	-1.1	-1.1
carbon source	Dextrin from potato starch; autoclaved 2.5 mg/ml (C)	+0.1	-0.2	-0.8	-0.8	-0.8
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.1	-0.1	-1.6	-0.4	-0.5
carbon source	D-Glucose 2.5 mg/ml (C)	-0.0	+0.1	-0.7	-0.9	-0.8
carbon source	D-Galactose 20 mM (C)	+0.2	-0.1	-1.0	-0.4	-0.8
carbon source	D-Xylose 2.5 mg/ml (C)	+0.0	-0.1	+0.3	-1.1	-1.2
carbon source	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)	+0.1	+0.1	+0.1	-1.2	-1.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day3	+0.4	-0.3	-0.9	-0.3	-0.8
carbon source	NAG 2.5 mg/ml (C)	-0.1	+0.1	+0.7	-1.3	-1.2
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.5	-0.4	-1.7	-0.3	+0.2
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen	+0.3	-0.2	-2.0	+0.3	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2	+0.4	+0.2	-1.0	+0.1	-0.7
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9	+0.7	+0.0	-1.8	+0.6	-0.6
carbon source	Pectin from citrus peel (C)	+0.9	-0.3	+0.1	-0.5	-1.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3	+1.0	-0.1	+0.5	-0.2	-0.9
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2	+0.6	+0.1	+1.0	-0.1	-0.6