Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS20225 and HMPREF1058_RS13675 are separated by 122 nucleotidesHMPREF1058_RS13675 and HMPREF1058_RS20540 are separated by 35 nucleotidesHMPREF1058_RS20540 and HMPREF1058_RS13670 are separated by 12 nucleotidesHMPREF1058_RS13670 and HMPREF1058_RS13665 are separated by 969 nucleotides HMPREF1058_RS20225: HMPREF1058_RS20225 - hypothetical protein, at 1,402,374 to 1,402,811 _RS20225 HMPREF1058_RS13675: HMPREF1058_RS13675 - hypothetical protein, at 1,402,934 to 1,403,296 _RS13675 HMPREF1058_RS20540: HMPREF1058_RS20540 - hypothetical protein, at 1,403,332 to 1,403,610 _RS20540 HMPREF1058_RS13670: HMPREF1058_RS13670 - TonB-dependent receptor, at 1,403,623 to 1,405,956 _RS13670 HMPREF1058_RS13665: HMPREF1058_RS13665 - helix-turn-helix domain-containing protein, at 1,406,926 to 1,407,219 _RS13665
Group Condition HMPREF1058_RS20225 HMPREF1058_RS13675 HMPREF1058_RS20540 HMPREF1058_RS13670 HMPREF1058_RS13665
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.0 +0.1 -2.8 -0.1 -0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 -0.1 -0.1 -2.2 -0.0 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.2 -0.2 -0.2 +0.0 -2.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 -0.3 -0.3 -0.5 -0.1 -1.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day4 -0.2 -0.2 -0.6 -0.1 -1.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +0.5 -0.0 -1.7 -0.1 -1.2
carbon source D-Mannose (C) -0.1 +0.1 -1.0 +0.0 -1.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.1 +0.0 -0.5 -0.1 -1.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.0 -0.2 -1.4 -0.2 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.6 -0.1 -2.1 -0.2 -0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.3 -0.7 -1.5 +0.0 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.3 +0.1 -0.8 -0.1 -1.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 -0.8 -0.1 +0.0 +0.0 -1.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.3 -0.1 -1.8 -0.2 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +0.3 +0.2 -1.9 -0.1 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +0.2 -0.1 -0.8 -0.0 -1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day5 -0.1 +0.3 -0.5 -0.1 -1.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.1 +0.2 -0.9 -0.0 -1.2
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) +0.4 -0.9 -0.7 -0.2 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.5 +0.5 -1.8 -0.2 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +0.3 +0.2 -1.3 -0.1 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 +0.5 +0.1 -1.0 -0.1 -1.2
carbon source NAG (C) -0.0 +0.5 -1.0 -0.0 -1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.7 +0.1 -0.6 -0.3 -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 +0.5 -0.5 -1.0 -0.0 -0.5
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.6 -0.2 -1.0 +0.1 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.7 -0.1 -1.3 -0.1 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +0.6 +0.1 -1.4 -0.1 +0.7
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.7 -0.3 +0.7 +0.1 +1.0
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.8 +1.1 +1.2 -0.2 -0.0
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HMPREF1058_RS20225
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HMPREF1058_RS13675
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HMPREF1058_RS13670
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HMPREF1058_RS13665
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