Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 297 experiments or choose conditions or try the comparative fitness browser

500 ntHMPREF1058_RS15140 and HMPREF1058_RS15135 are separated by 57 nucleotidesHMPREF1058_RS15135 and HMPREF1058_RS20490 are separated by 72 nucleotidesHMPREF1058_RS20490 and HMPREF1058_RS15130 are separated by 36 nucleotidesHMPREF1058_RS15130 and HMPREF1058_RS15125 are separated by 10 nucleotides HMPREF1058_RS15140: HMPREF1058_RS15140 - SusC/RagA family TonB-linked outer membrane protein, at 999,268 to 1,002,762 _RS15140 HMPREF1058_RS15135: HMPREF1058_RS15135 - DUF4974 domain-containing protein, at 1,002,820 to 1,003,899 _RS15135 HMPREF1058_RS20490: HMPREF1058_RS20490 - RNA polymerase subunit sigma-70, at 1,003,972 to 1,004,154 _RS20490 HMPREF1058_RS15130: HMPREF1058_RS15130 - transposase, at 1,004,191 to 1,005,195 _RS15130 HMPREF1058_RS15125: HMPREF1058_RS15125 - transposase family protein, at 1,005,206 to 1,005,556 _RS15125
Group Condition HMPREF1058_RS15140 HMPREF1058_RS15135 HMPREF1058_RS20490 HMPREF1058_RS15130 HMPREF1058_RS15125
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.2 +0.0 -2.5 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 +0.1 -0.0 -1.9 N.D. N.D.
carbon source D-Glucose 5 mg/ml (C) -0.1 -0.1 -1.4 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -0.0 -0.1 -1.2 N.D. N.D.
carbon source D-Glucose (C) -0.1 +0.1 -1.3 N.D. N.D.
carbon source D-Mannose 20 mM (C) +0.1 -0.1 -1.1 N.D. N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.1 -0.1 -1.0 N.D. N.D.
carbon source D-Glucose (C) -0.2 +0.3 -1.2 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 -0.2 -0.4 -0.5 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 -0.0 -0.1 -1.0 N.D. N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.1 +0.1 -1.1 N.D. N.D.
carbon source Fructose-6-phosphate (C) +0.0 +0.0 -1.0 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 +0.1 -0.3 -0.7 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +0.2 -0.1 -0.8 N.D. N.D.
carbon source D-Galactose (C) +0.1 +0.4 -1.0 N.D. N.D.
carbon source D-Galactose 20 mM (C) +0.2 +0.0 -0.7 N.D. N.D.
carbon source D-Maltose 20 mM (C) -0.1 +0.3 -0.6 N.D. N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.0 -0.3 +0.7 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1 -0.2 -0.0 +0.8 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 -0.1 -0.1 +0.9 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 -0.1 +0.2 +0.8 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.2 -0.1 +0.8 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day5 +0.2 -0.1 +0.8 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day6 +0.2 +0.1 +0.8 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +0.3 +0.3 +0.5 N.D. N.D.
carbon source beta-Cyclodextrin 5 mg/ml (C) -0.0 -0.0 +1.2 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 +0.2 +0.2 +0.8 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.1 +0.1 +1.0 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +0.2 +0.2 +0.8 N.D. N.D.
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.0 -0.0 +1.5 N.D. N.D.
remove
HMPREF1058_RS15140
plot		 remove
HMPREF1058_RS15135
plot		 remove
HMPREF1058_RS20490		 remove
HMPREF1058_RS15130
plot		 remove
HMPREF1058_RS15125
plot