Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS18960 and HMPREF1058_RS18955 are separated by 2 nucleotidesHMPREF1058_RS18955 and HMPREF1058_RS20355 are separated by 200 nucleotidesHMPREF1058_RS20355 and HMPREF1058_RS18945 overlap by 4 nucleotidesHMPREF1058_RS18945 and HMPREF1058_RS18940 are separated by 4 nucleotides HMPREF1058_RS18960: HMPREF1058_RS18960 - hypothetical protein, at 40,841 to 41,044 _RS18960 HMPREF1058_RS18955: HMPREF1058_RS18955 - DUF551 domain-containing protein, at 41,047 to 41,409 _RS18955 HMPREF1058_RS20355: HMPREF1058_RS20355 - hypothetical protein, at 41,610 to 41,927 _RS20355 HMPREF1058_RS18945: HMPREF1058_RS18945 - DNA methylase N-4, at 41,924 to 44,440 _RS18945 HMPREF1058_RS18940: HMPREF1058_RS18940 - hypothetical protein, at 44,445 to 44,846 _RS18940
Group Condition HMPREF1058_RS18960 HMPREF1058_RS18955 HMPREF1058_RS20355 HMPREF1058_RS18945 HMPREF1058_RS18940
carbon source Beta-Lactose 20 mM (C) -0.6 -0.9 -0.2 -0.2 -4.3
carbon source Dextran 5 mg/ml (C) -0.5 -0.7 -0.6 -0.2 -3.9
carbon source D-Glucose (C) -0.9 -0.5 -1.3 -0.2 -2.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 -0.7 -0.6 -2.7 -0.4 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -0.9 -1.3 -0.3 +0.2 -1.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 -0.1 -0.7 -1.3 +0.0 -2.0
carbon source D-Maltose 20 mM (C) -0.3 -1.0 -1.0 -0.4 -1.1
carbon source D-Galactose 20 mM (C) -0.1 +0.1 -0.8 -0.5 -2.6
carbon source D-Glucose 5 mg/ml (C) -0.3 -1.4 -0.4 -0.4 -1.2
carbon source NAG 20 mM (C) -0.2 -0.5 -0.7 -0.2 -2.0
carbon source D-Glucose 5 mg/ml (C) -0.9 -1.5 -0.4 -0.2 -0.5
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.4 -0.9 -0.8 -0.2 -1.1
carbon source Sucrose 20 mM (C) -0.9 +0.0 -1.3 -0.5 -0.7
carbon source D-Mannose 2.5 mg/ml (C) -0.7 -1.1 -1.5 -0.2 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 -1.3 -1.0 +1.0 -0.1 -0.4
carbon source Amylose from potato 5 mg/ml (C) -2.8 +0.5 +0.8 -0.1 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -1.0 -1.1 +0.6 -0.2 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 -0.1 -1.3 -0.7 -0.0 +1.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -1.6 -0.4 -0.3 -0.1 +1.5
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.7 +0.5 -1.5 +0.1 +1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +1.3 -1.4 +0.5 -0.1 -0.5
carbon source Dextran 5 mg/ml (C) -1.3 -0.4 +0.1 -0.2 +1.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 -0.4 -1.0 -0.6 -0.1 +1.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 -1.1 -0.6 +0.7 -0.0 +0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 -0.1 -1.0 -0.3 -0.2 +2.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 +0.3 -1.0 +0.6 -0.3 +1.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 -1.0 -0.6 +1.0 -0.1 +1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 -0.1 -1.1 +0.7 -0.2 +2.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.2 -0.6 -0.4 -0.1 +2.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 -1.1 +0.0 +1.0 -0.1 +1.5
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HMPREF1058_RS18960
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HMPREF1058_RS18955
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HMPREF1058_RS18940
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