Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS20320	HMPREF1058_RS19160	HMPREF1058_RS19155	HMPREF1058_RS21305	HMPREF1058_RS19150
carbon source	Polygalacturonic 5 mg/ml (C)	-0.4	-0.4	-1.4	-1.1	-0.4
carbon source	Arabinan from sugar beet 5mg/ml (C)	-0.6	+0.2	-0.9	-1.6	-0.5
carbon source	D-Maltose 20 mM (C)	-0.6	-0.1	-1.2	-0.9	-0.4
carbon source	D-Fructose 20 mM (C)	-0.2	-0.6	-1.1	-0.6	-0.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7	-0.1	-0.4	-1.0	-1.0	-0.2
carbon source	Polygalacturonic 5 mg/ml (C)	-0.2	-0.4	-1.1	-0.8	-0.2
carbon source	Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)	-0.2	-0.3	-0.9	-0.7	-0.4
carbon source	L-Arabinose 20 mM (C)	-0.3	-0.4	-0.9	-0.4	-0.5
carbon source	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)	-0.1	-0.1	-0.4	-1.6	-0.5
carbon source	Arabinan from sugar beet 5mg/ml (C)	-0.2	-0.3	-0.9	-0.7	-0.4
carbon source	a-Cyclodextrin (C)	-0.6	-0.3	-1.0	-0.1	-0.5
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8	-0.3	-0.6	-0.5	-0.9	-0.2
carbon source	Galactose 1-phosphate dipotassium salt (C)	-0.5	+0.1	-1.0	-0.8	-0.3
carbon source	Pectic galactan from potato 5mg/ml (C)	-0.1	-0.8	-0.7	-0.5	-0.4
carbon source	Beta-Lactose 20 mM (C)	-0.1	-0.3	-1.3	-0.3	-0.3
carbon source	D-Xylose 20 mM (C)	-0.2	-0.4	-0.8	-0.7	-0.2
carbon source	Pectic galactan from potato 5mg/ml (C)	-0.3	-0.6	-0.2	-0.6	-0.6
carbon source	beta-Cyclodextrin 5 mg/ml (C)	-0.3	-0.0	-1.0	-0.7	-0.3
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.1	+0.2	-0.2	-2.1	-0.1
carbon source	D-Maltose 20 mM (C)	-0.2	+0.0	-1.0	-0.8	-0.4
carbon source	D-Galactose 20 mM (C)	+0.2	+0.2	-1.4	-0.9	-0.3
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	-0.2	-0.1	+0.3	-1.2	-0.5
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7	+0.7	-0.8	-0.4	-0.5	-0.1
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.0	-1.0	+0.8	-0.3	-0.7
carbon source	(+)-Arabinogalactan; filtered 2.5 mg/ml (C)	+0.2	-0.6	+0.6	-0.5	-0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14	+0.5	+0.4	-0.6	-0.7	-0.4
carbon source	Sucrose 20 mM (C)	-0.7	-0.6	+0.9	+0.1	-0.5
carbon source	D-Glucose 20 mM (C)	-0.6	+0.3	-0.5	+0.6	-0.2
carbon source	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)	+0.3	-0.4	+0.7	-0.7	-0.2
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	-0.7	+0.4	+0.3	+1.0	-0.3