Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS19025 and HMPREF1058_RS19020 are separated by 597 nucleotidesHMPREF1058_RS19020 and HMPREF1058_RS19015 are separated by 39 nucleotidesHMPREF1058_RS19015 and HMPREF1058_RS19010 are separated by 391 nucleotidesHMPREF1058_RS19010 and HMPREF1058_RS19005 are separated by 145 nucleotides HMPREF1058_RS19025: HMPREF1058_RS19025 - hypothetical protein, at 31,465 to 31,662 _RS19025 HMPREF1058_RS19020: HMPREF1058_RS19020 - hypothetical protein, at 32,260 to 32,469 _RS19020 HMPREF1058_RS19015: HMPREF1058_RS19015 - hypothetical protein, at 32,509 to 32,763 _RS19015 HMPREF1058_RS19010: HMPREF1058_RS19010 - M48 family metallopeptidase, at 33,155 to 33,940 _RS19010 HMPREF1058_RS19005: HMPREF1058_RS19005 - HigA family addiction module antidote protein, at 34,086 to 34,430 _RS19005
Group Condition HMPREF1058_RS19025 HMPREF1058_RS19020 HMPREF1058_RS19015 HMPREF1058_RS19010 HMPREF1058_RS19005
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen -2.3 -1.0 -1.8 -0.1 N.D.
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) -1.5 -1.2 -2.1 +0.1 N.D.
carbon source Mucin from porcine stomach,Type II; autoclaved 2.5 mg/ml (C) -3.0 -1.0 -0.7 -0.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -3.4 +1.2 -1.1 -1.3 N.D.
carbon source D-Glucose 5 mg/ml (C) -0.2 -1.8 -2.0 -0.4 N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -1.0 -0.7 -2.0 -0.7 N.D.
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) -2.5 -0.4 -0.5 -0.6 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -2.0 -2.6 -0.4 +1.0 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -1.0 -1.3 -1.4 -0.2 N.D.
carbon source L-Fucose 20 mM (C) -1.6 -0.6 -1.1 -0.3 N.D.
carbon source (+)-Arabinogalactan 5 mg/ml (C) -1.5 -0.1 -1.6 -0.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -2.3 +0.3 -1.5 +0.2 N.D.
carbon source beta-Cyclodextrin 5 mg/ml (C) -2.3 -0.5 +0.4 -0.9 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -2.1 +0.5 -0.9 -0.7 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.6 -0.7 -1.6 -0.3 N.D.
carbon source Amylose from potato 5 mg/ml (C) -1.1 -0.7 -1.3 -0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 -3.3 +0.7 -0.0 -0.5 N.D.
carbon source beta-Cyclodextrin 2.5 mg/ml (C) -1.2 -0.8 -0.9 -0.2 N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -1.9 -1.2 -0.5 +0.6 N.D.
carbon source D-Galacturonic Acid 20 mM (C) -2.7 -0.2 +0.0 +0.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -1.9 -0.2 -0.9 +0.5 N.D.
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.4 -0.6 -2.0 -0.3 N.D.
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -1.8 -1.2 +0.8 -0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -1.2 +0.3 -1.7 +0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 -1.5 +0.2 -1.1 +0.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 -2.2 +0.5 -0.3 -0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -1.0 +0.5 -1.8 +0.3 N.D.
carbon source Dextran 5 mg/ml (C) -2.3 -0.1 +0.5 +0.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +1.0 +1.0 -1.1 -0.1 N.D.
carbon source D-Galactose (C) +1.7 +0.8 +1.3 -0.4 N.D.
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