Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS18945 and HMPREF1058_RS18940 are separated by 4 nucleotidesHMPREF1058_RS18940 and HMPREF1058_RS18935 are separated by 187 nucleotidesHMPREF1058_RS18935 and HMPREF1058_RS18930 overlap by 26 nucleotidesHMPREF1058_RS18930 and HMPREF1058_RS18925 are separated by 4 nucleotides HMPREF1058_RS18945: HMPREF1058_RS18945 - DNA methylase N-4, at 41,924 to 44,440 _RS18945 HMPREF1058_RS18940: HMPREF1058_RS18940 - hypothetical protein, at 44,445 to 44,846 _RS18940 HMPREF1058_RS18935: HMPREF1058_RS18935 - hypothetical protein, at 45,034 to 45,615 _RS18935 HMPREF1058_RS18930: HMPREF1058_RS18930 - hypothetical protein, at 45,590 to 46,603 _RS18930 HMPREF1058_RS18925: HMPREF1058_RS18925 - DEAD/DEAH box helicase, at 46,608 to 47,780 _RS18925
Group Condition HMPREF1058_RS18945 HMPREF1058_RS18940 HMPREF1058_RS18935 HMPREF1058_RS18930 HMPREF1058_RS18925
carbon source Dextran 5 mg/ml (C) -0.2 -3.9 -0.1 +0.5 -0.4
carbon source Beta-Lactose 20 mM (C) -0.2 -4.3 +0.0 +0.4 -0.0
carbon source D-Galactose 20 mM (C) -0.5 -2.6 +0.1 -0.4 -0.4
carbon source Galactose 1-phosphate dipotassium salt (C) -0.2 -1.4 -0.6 -0.0 -0.5
carbon source D-Glucose (C) -0.2 -2.5 -0.1 +0.6 +0.1
carbon source D-Galactose 20 mM (C) -0.4 -1.4 +0.5 -0.5 -0.3
carbon source D-Mannose 20 mM (C) -0.4 -1.2 +0.7 +0.1 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 -0.1 -2.1 +0.5 +0.1 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.2 -1.8 +0.3 -0.3 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 +0.0 -2.0 +0.4 +0.3 +0.9
carbon source Dextran 5 mg/ml (C) -0.2 +1.6 -1.3 -0.3 -0.2
carbon source D-Maltose 20 mM (C) -0.4 -1.1 +0.8 +0.4 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 -0.5 +0.1 +0.7 -0.8 +0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -0.4 +0.7 +0.6 -1.1 +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -0.3 +1.3 +0.0 -0.5 +0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 -0.4 +1.2 +0.6 -0.4 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day6 -0.2 +1.4 +0.7 -0.3 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day6 -0.2 +1.4 +0.6 -0.2 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 -0.1 +0.8 +1.2 -0.4 +0.7
carbon source beta-Cyclodextrin 5 mg/ml (C) -0.3 +1.2 +1.0 -0.1 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 -0.1 +1.5 +0.8 -0.2 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 -0.1 +1.8 +0.6 -0.0 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 -0.1 +1.9 +0.6 -0.3 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 -0.2 +1.0 +0.9 -0.0 +0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -0.1 +1.5 +1.1 -0.6 +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 -0.2 +2.0 +0.7 +0.0 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 -0.1 +1.7 +1.1 -0.3 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 -0.2 +2.1 +0.6 +0.2 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 -0.0 +1.3 +1.4 -0.3 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 -0.1 +2.2 +1.4 -0.1 +0.5
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HMPREF1058_RS18945
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HMPREF1058_RS18940
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HMPREF1058_RS18930
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HMPREF1058_RS18925
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