Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS18930 and HMPREF1058_RS18925 are separated by 4 nucleotidesHMPREF1058_RS18925 and HMPREF1058_RS18920 overlap by 16 nucleotidesHMPREF1058_RS18920 and HMPREF1058_RS18915 are separated by 23 nucleotidesHMPREF1058_RS18915 and HMPREF1058_RS0119260 overlap by 16 nucleotides HMPREF1058_RS18930: HMPREF1058_RS18930 - hypothetical protein, at 45,590 to 46,603 _RS18930 HMPREF1058_RS18925: HMPREF1058_RS18925 - DEAD/DEAH box helicase, at 46,608 to 47,780 _RS18925 HMPREF1058_RS18920: HMPREF1058_RS18920 - hypothetical protein, at 47,765 to 48,406 _RS18920 HMPREF1058_RS18915: HMPREF1058_RS18915 - recombination protein NinG, at 48,430 to 48,909 _RS18915 HMPREF1058_RS0119260: HMPREF1058_RS0119260 - hypothetical protein, at 48,894 to 49,088 _RS0119260
Group Condition HMPREF1058_RS18930 HMPREF1058_RS18925 HMPREF1058_RS18920 HMPREF1058_RS18915 HMPREF1058_RS0119260
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 -0.2 +0.4 -0.7 -1.3 -1.7
carbon source Polygalacturonic 5 mg/ml (C) -0.4 -0.3 -0.8 +0.5 -2.2
carbon source Galactose 1-phosphate dipotassium salt (C) -0.2 -0.1 +0.2 -0.8 -1.4
carbon source D-Arabinose 2.5 mg/ml (C) -0.1 -0.4 -0.2 +0.2 -1.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -0.3 +0.7 -0.2 -0.7 -1.5
carbon source D-Glucose (C) -0.7 -0.1 +0.3 +0.1 -1.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 +0.0 +0.6 -0.3 -1.1 -1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.0 +0.6 -0.9 -0.3 -1.0
carbon source D-Glucose (C) +0.6 +0.1 -0.2 +0.2 -2.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -0.1 +0.5 -0.2 +0.3 -1.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 -0.1 +0.9 -0.2 -0.8 -0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 +0.2 +0.5 -0.0 -1.0 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 -0.1 +1.1 -0.4 -0.7 -1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +0.1 +0.5 +0.2 +0.3 -1.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 -0.8 +0.9 -0.5 -0.4 +1.0
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.6 -0.2 +0.2 -0.6 +1.6
carbon source D-Galactose 20 mM (C) +0.1 +0.2 -0.8 -0.6 +1.4
carbon source Dextran 5 mg/ml (C) -0.3 -0.2 -1.1 +0.8 +1.2
carbon source D-Mannose 20 mM (C) -0.3 -0.4 -0.1 -0.4 +1.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -1.1 +0.8 +0.4 -0.2 +0.9
carbon source Dextran 5 mg/ml (C) +0.5 -0.4 -0.4 +0.7 +0.7
carbon source Sucrose 20 mM (C) -0.1 +0.3 -0.4 -0.3 +1.7
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.1 -0.4 -0.3 +0.3 +1.7
carbon source Amylose from potato 5 mg/ml (C) +0.4 -0.6 -0.1 +0.2 +1.3
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen -0.3 -0.2 +0.2 +0.8 +1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.3 +0.1 -0.2 +0.0 +2.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.2 +0.6 -0.1 +0.7 +0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 -0.4 +0.7 -0.2 +0.1 +2.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.5 +0.7 -0.1 +0.6 +1.0
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.3 +0.0 +0.5 -0.0 +2.1
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HMPREF1058_RS18930
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HMPREF1058_RS18925
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HMPREF1058_RS18915
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HMPREF1058_RS0119260
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