Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS18905 and HMPREF1058_RS18900 are separated by 1 nucleotidesHMPREF1058_RS18900 and HMPREF1058_RS18895 are separated by 11 nucleotidesHMPREF1058_RS18895 and HMPREF1058_RS20200 overlap by 11 nucleotidesHMPREF1058_RS20200 and HMPREF1058_RS18890 are separated by 27 nucleotides HMPREF1058_RS18905: HMPREF1058_RS18905 - hypothetical protein, at 50,088 to 50,519 _RS18905 HMPREF1058_RS18900: HMPREF1058_RS18900 - hypothetical protein, at 50,521 to 50,706 _RS18900 HMPREF1058_RS18895: HMPREF1058_RS18895 - hypothetical protein, at 50,718 to 51,155 _RS18895 HMPREF1058_RS20200: HMPREF1058_RS20200 - HNH endonuclease, at 51,145 to 51,759 _RS20200 HMPREF1058_RS18890: HMPREF1058_RS18890 - DUF3127 domain-containing protein, at 51,787 to 52,233 _RS18890
Group Condition HMPREF1058_RS18905 HMPREF1058_RS18900 HMPREF1058_RS18895 HMPREF1058_RS20200 HMPREF1058_RS18890
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -1.2 N.D. -0.7 -0.5 -0.7
carbon source D-Galacturonic Acid 20 mM (C) -1.3 N.D. -0.9 -0.2 -0.7
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.5 N.D. -2.8 +0.2 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 -1.5 N.D. -0.9 -0.5 +1.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -1.2 N.D. +1.4 +0.7 -1.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.7 N.D. +0.1 -1.1 +0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -0.6 N.D. -1.1 -0.3 +1.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 -0.9 N.D. -0.3 -0.4 +1.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 -0.9 N.D. -0.5 -0.1 +1.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day5 -1.0 N.D. +0.3 -0.3 +1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 -0.8 N.D. +0.3 -0.4 +1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 -0.8 N.D. +0.5 -0.8 +1.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -0.6 N.D. +0.3 -0.7 +1.8
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.7 N.D. +1.6 +0.5 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -0.5 N.D. -0.8 +0.5 +1.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 -0.8 N.D. +0.7 -0.7 +1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3 -0.7 N.D. +0.7 -0.4 +1.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.2 N.D. -1.5 +0.8 +1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 -0.6 N.D. +0.4 +0.7 +1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -0.4 N.D. +0.8 -0.3 +1.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 -0.0 N.D. +2.2 -0.6 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 -0.7 N.D. +1.3 -0.1 +1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 -0.3 N.D. +0.3 +0.4 +1.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 -0.2 N.D. +1.0 -0.0 +1.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 -0.3 N.D. +1.0 +0.6 +1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 -0.4 N.D. +1.4 -0.3 +1.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.1 N.D. +0.6 +0.1 +1.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 -0.1 N.D. +1.0 +0.2 +2.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 -0.1 N.D. +0.6 +0.5 +2.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +0.1 N.D. +1.3 +0.3 +1.8
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HMPREF1058_RS18905
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HMPREF1058_RS18890
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