Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS18845 and HMPREF1058_RS18840 are separated by 15 nucleotidesHMPREF1058_RS18840 and HMPREF1058_RS18835 are separated by 24 nucleotidesHMPREF1058_RS18835 and HMPREF1058_RS18830 are separated by 866 nucleotidesHMPREF1058_RS18830 and HMPREF1058_RS18825 are separated by 168 nucleotides HMPREF1058_RS18845: HMPREF1058_RS18845 - hypothetical protein, at 57,616 to 58,395 _RS18845 HMPREF1058_RS18840: HMPREF1058_RS18840 - DUF4236 domain-containing protein, at 58,411 to 59,670 _RS18840 HMPREF1058_RS18835: HMPREF1058_RS18835 - hypothetical protein, at 59,695 to 60,003 _RS18835 HMPREF1058_RS18830: HMPREF1058_RS18830 - hypothetical protein, at 60,870 to 61,079 _RS18830 HMPREF1058_RS18825: HMPREF1058_RS18825 - hypothetical protein, at 61,248 to 61,562 _RS18825
Group Condition HMPREF1058_RS18845 HMPREF1058_RS18840 HMPREF1058_RS18835 HMPREF1058_RS18830 HMPREF1058_RS18825
carbon source Dextran 5 mg/ml (C) N.D. +0.1 -2.3 -1.6 N.D.
carbon source Amylose from potato 5 mg/ml (C) N.D. +0.2 -0.0 -3.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 N.D. -0.0 +0.3 -3.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. -0.2 -0.7 -1.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. -0.3 -0.1 -2.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 N.D. -0.4 -0.0 -1.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 N.D. +0.4 +0.2 -2.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 N.D. -0.2 -0.5 -1.6 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 N.D. -0.4 -0.0 -1.7 N.D.
carbon source (+)-Arabinogalactan 5 mg/ml (C) N.D. +0.5 -1.1 -1.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day5 N.D. -0.2 -0.4 -1.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 N.D. -0.3 -0.2 -1.4 N.D.
carbon source D-Galactose 20 mM (C) N.D. -0.3 -0.3 -1.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 N.D. +0.1 -0.4 -1.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 N.D. -0.1 +0.1 -1.8 N.D.
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) N.D. +0.4 -0.7 -1.1 N.D.
carbon source Sucrose 20 mM (C) N.D. -0.3 +0.3 -1.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day6 N.D. +0.4 -0.0 -1.7 N.D.
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) N.D. -0.0 +0.5 -1.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 N.D. +0.1 +0.4 -1.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 N.D. +0.7 +1.1 -2.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 N.D. +0.3 +0.8 -1.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 N.D. +0.6 +0.7 -1.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 N.D. +0.6 +1.1 -1.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 N.D. +0.6 +1.1 -1.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 N.D. +0.6 +1.1 -0.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 N.D. +0.7 +1.3 -0.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 N.D. +0.8 +1.3 -0.6 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. +0.3 +1.0 +0.9 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen N.D. +0.0 +2.1 +0.1 N.D.
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HMPREF1058_RS18845
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HMPREF1058_RS18840
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HMPREF1058_RS18830
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HMPREF1058_RS18825
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