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Protein
Homologs
Fitness for 5 genes in
Phocaeicola vulgatus CL09T03C04
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HMPREF1058_RS18680 and HMPREF1058_RS18675 are separated by 10 nucleotides
HMPREF1058_RS18675 and HMPREF1058_RS18670 are separated by 31 nucleotides
HMPREF1058_RS18670 and HMPREF1058_RS18660 are separated by 424 nucleotides
HMPREF1058_RS18660 and HMPREF1058_RS18655 are separated by 8 nucleotides
HMPREF1058_RS18680: HMPREF1058_RS18680 - F0F1 ATP synthase subunit B, at 102,292 to 102,792
_RS18680
HMPREF1058_RS18675: HMPREF1058_RS18675 - ATP synthase F0 subunit C, at 102,803 to 103,057
_RS18675
HMPREF1058_RS18670: HMPREF1058_RS18670 - F0F1 ATP synthase subunit A, at 103,089 to 104,180
_RS18670
HMPREF1058_RS18660: HMPREF1058_RS18660 - hypothetical protein, at 104,605 to 104,859
_RS18660
HMPREF1058_RS18655: HMPREF1058_RS18655 - F0F1 ATP synthase subunit beta, at 104,868 to 106,403
_RS18655
Group
Condition
HMPREF1058
_RS18680
HMPREF1058
_RS18675
HMPREF1058
_RS18670
HMPREF1058
_RS18660
HMPREF1058
_RS18655
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
-4.4
-3.7
-3.5
-2.7
-3.4
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14
-3.6
-2.7
-3.7
-2.6
-4.2
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
-4.1
-2.8
-3.6
-2.2
-3.5
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7
-3.0
-3.5
-3.0
-2.2
-2.6
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6
-2.9
-3.4
-3.2
-1.9
-2.5
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day5
-2.6
-2.6
-2.6
-2.4
-2.6
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5
-2.8
-2.5
-2.0
-2.9
-2.0
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7
-3.2
-2.3
-2.2
-2.2
-2.1
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4
-2.1
-1.9
-2.0
-3.0
-1.7
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6
-2.2
-2.1
-2.3
-1.6
-2.2
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6
-2.9
-2.0
-1.8
-1.4
-1.8
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7
-2.6
-2.4
-1.7
-1.0
-1.8
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5
-1.8
-2.2
-1.9
-2.1
-1.5
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9
-2.6
-1.5
-1.8
-1.2
-1.9
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
-2.9
-1.1
-1.3
-2.0
-1.6
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2
-1.6
-1.7
-2.3
-2.0
-1.2
mouse
diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day5
-2.1
-2.4
-1.8
-1.3
-1.0
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day4
-1.9
-1.7
-1.5
-2.1
-1.3
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day3
-1.8
-1.5
-1.7
-1.8
-1.4
mouse
diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8
-1.0
-1.8
-1.1
-3.0
-1.0
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4
-1.8
-1.6
-2.0
-1.2
-1.2
mouse
diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6
-2.2
-1.9
-1.4
-1.0
-1.2
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day4
-2.1
-1.3
-1.9
-0.5
-1.5
mouse
diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4
-1.7
-1.9
-1.5
-1.0
-1.2
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9
-2.2
-1.1
-1.5
-1.5
-0.9
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5
-1.0
-1.9
-1.8
-1.2
-1.2
mouse
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9
-2.4
-1.5
-1.2
-0.9
-1.2
mouse
diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
-1.6
-1.2
-1.4
-1.7
-1.1
mouse
diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day4
-1.6
-1.6
-1.2
-1.2
-1.2
mouse
diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2
-0.5
-2.4
-1.3
-1.9
-0.8
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HMPREF1058_RS18670
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