Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS18195 and HMPREF1058_RS18190 are separated by 117 nucleotidesHMPREF1058_RS18190 and HMPREF1058_RS18180 are separated by 758 nucleotidesHMPREF1058_RS18180 and HMPREF1058_RS18175 are separated by 4 nucleotidesHMPREF1058_RS18175 and HMPREF1058_RS18170 overlap by 35 nucleotides HMPREF1058_RS18195: HMPREF1058_RS18195 - IS1182 family transposase, at 237,191 to 238,846 _RS18195 HMPREF1058_RS18190: HMPREF1058_RS18190 - hypothetical protein, at 238,964 to 239,716 _RS18190 HMPREF1058_RS18180: HMPREF1058_RS18180 - hypothetical protein, at 240,475 to 241,200 _RS18180 HMPREF1058_RS18175: HMPREF1058_RS18175 - relaxase/mobilization nuclease domain-containing protein, at 241,205 to 242,131 _RS18175 HMPREF1058_RS18170: HMPREF1058_RS18170 - MobC family plasmid mobilization relaxosome protein, at 242,097 to 242,480 _RS18170
Group Condition HMPREF1058_RS18195 HMPREF1058_RS18190 HMPREF1058_RS18180 HMPREF1058_RS18175 HMPREF1058_RS18170
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 N.D. -0.2 -0.1 -1.2 -1.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 N.D. -0.1 -1.3 +0.2 -2.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 N.D. -0.1 +0.4 -0.5 -2.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 N.D. -0.1 -1.5 +0.3 -1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. -0.4 +0.3 +0.1 -3.0
carbon source Sucrose 20 mM (C) N.D. +0.1 -0.2 -0.5 -2.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 N.D. -0.1 -1.5 +0.4 -1.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 N.D. -0.2 -1.2 -0.0 -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 N.D. -0.1 +0.1 -0.4 -2.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 N.D. -0.2 +0.1 -1.8 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 N.D. -0.1 -1.2 +0.4 -1.3
carbon source D-Glucose (C) N.D. +0.1 -0.3 -0.3 -1.7
carbon source D-Glucose (C) N.D. +0.1 -0.6 +0.2 -1.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 N.D. -0.1 +0.1 +0.3 -2.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 N.D. -0.2 +0.6 -0.0 -2.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 N.D. -0.1 -0.4 +0.8 -1.9
carbon source D-Mannose 20 mM (C) N.D. +0.1 -0.2 +0.5 -1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 N.D. -0.1 +0.4 +0.4 -2.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. -0.1 +0.5 +0.1 -1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 N.D. -0.3 +0.0 +0.6 -1.6
carbon source (+)-Arabinogalactan 5 mg/ml (C) N.D. -0.4 +1.3 -0.8 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 N.D. -0.3 +0.3 +0.4 -1.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 N.D. -0.2 +0.8 +0.8 -2.2
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) N.D. -0.4 +1.1 -0.1 -0.9
carbon source Polygalacturonic 5 mg/ml (C) N.D. -0.0 +0.2 -1.1 +1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 N.D. -0.1 +0.7 +1.0 -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 N.D. -0.2 +0.8 -0.5 +0.9
carbon source Dextran 5 mg/ml (C) N.D. +0.6 -0.1 -0.3 +1.4
carbon source (+)-Arabinogalactan 5 mg/ml (C) N.D. -0.2 +1.6 +0.7 -0.3
carbon source Amylose from potato 5 mg/ml (C) N.D. +0.4 +0.4 +0.6 +1.5
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HMPREF1058_RS18195
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HMPREF1058_RS18190
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