Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS18175 and HMPREF1058_RS18170 overlap by 35 nucleotidesHMPREF1058_RS18170 and HMPREF1058_RS18165 are separated by 153 nucleotidesHMPREF1058_RS18165 and HMPREF1058_RS20215 are separated by 131 nucleotidesHMPREF1058_RS20215 and HMPREF1058_RS0119310 overlap by 4 nucleotides HMPREF1058_RS18175: HMPREF1058_RS18175 - relaxase/mobilization nuclease domain-containing protein, at 241,205 to 242,131 _RS18175 HMPREF1058_RS18170: HMPREF1058_RS18170 - MobC family plasmid mobilization relaxosome protein, at 242,097 to 242,480 _RS18170 HMPREF1058_RS18165: HMPREF1058_RS18165 - toprim domain-containing protein, at 242,634 to 243,674 _RS18165 HMPREF1058_RS20215: HMPREF1058_RS20215 - hypothetical protein, at 243,806 to 244,141 _RS20215 HMPREF1058_RS0119310: HMPREF1058_RS0119310 - DUF3987 domain-containing protein, at 244,138 to 245,163 _RS0119310
Group Condition HMPREF1058_RS18175 HMPREF1058_RS18170 HMPREF1058_RS18165 HMPREF1058_RS20215 HMPREF1058_RS0119310
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -1.2 -1.9 -1.1 -0.1 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.1 -3.0 -0.3 -0.3 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -0.4 -2.2 -0.1 -0.6 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 -0.5 -2.8 -0.1 -0.0 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.0 -2.0 -0.2 -0.4 -0.3
carbon source Sucrose 20 mM (C) -0.5 -2.1 -0.5 -0.1 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 -0.3 -1.1 -1.2 -0.4 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 -0.1 -1.5 -0.9 -0.5 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -1.8 -0.7 -0.7 -0.1 +0.3
carbon source D-Glucose (C) -0.3 -1.7 -0.6 -0.0 -0.2
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) -1.1 -0.7 +0.1 -0.6 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 -0.0 -1.3 -0.7 -0.8 +0.2
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.8 -1.2 -0.4 -0.9 +0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.3 -1.7 -0.6 -0.7 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +0.8 -1.9 -1.0 -0.3 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +0.2 -2.1 +0.1 -0.6 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.4 -1.5 -0.5 -0.7 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +0.3 -2.0 +0.1 +0.2 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 +0.8 -2.2 -0.2 -0.2 -0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.4 -1.3 -0.6 -0.5 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +0.5 -1.6 -0.5 -0.3 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 +0.4 -2.0 +0.2 -0.1 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.4 -1.5 -0.5 -0.2 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +1.0 -1.3 -0.4 -0.6 +0.1
carbon source D-Mannose 20 mM (C) +0.5 -1.7 -0.2 +0.6 +0.0
carbon source Polygalacturonic 5 mg/ml (C) -1.1 +1.2 -0.3 -0.3 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 +0.6 -1.6 +0.2 +0.4 +0.0
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.7 -0.3 -0.2 -0.6 +0.9
carbon source D-Galactose (C) +0.5 +1.0 -0.3 +0.4 -0.5
carbon source Dextran 5 mg/ml (C) -0.3 +1.4 +0.6 +0.5 +0.2
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HMPREF1058_RS18175
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HMPREF1058_RS20215
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HMPREF1058_RS0119310
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