Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS0119310 and HMPREF1058_RS18160 are separated by 107 nucleotidesHMPREF1058_RS18160 and HMPREF1058_RS18155 are separated by 139 nucleotidesHMPREF1058_RS18155 and HMPREF1058_RS18150 are separated by 9 nucleotidesHMPREF1058_RS18150 and HMPREF1058_RS18145 are separated by 2 nucleotides HMPREF1058_RS0119310: HMPREF1058_RS0119310 - DUF3987 domain-containing protein, at 244,138 to 245,163 _RS0119310 HMPREF1058_RS18160: HMPREF1058_RS18160 - hypothetical protein, at 245,271 to 245,513 _RS18160 HMPREF1058_RS18155: HMPREF1058_RS18155 - helix-turn-helix transcriptional regulator, at 245,653 to 246,315 _RS18155 HMPREF1058_RS18150: HMPREF1058_RS18150 - Fic family protein, at 246,325 to 247,065 _RS18150 HMPREF1058_RS18145: HMPREF1058_RS18145 - Fic family protein, at 247,068 to 247,829 _RS18145
Group Condition HMPREF1058_RS0119310 HMPREF1058_RS18160 HMPREF1058_RS18155 HMPREF1058_RS18150 HMPREF1058_RS18145
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +0.2 -1.8 -1.6 -0.1 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 -0.4 -0.8 -2.0 +0.0 -0.3
carbon source beta-Cyclodextrin 5 mg/ml (C) -0.1 -2.0 -1.1 -0.1 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -0.1 -2.0 -1.4 +0.5 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 -0.1 -1.3 -2.5 +0.9 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 +0.1 -2.1 -0.7 +0.4 -0.7
carbon source Arabinan from sugar beet 5mg/ml (C) +0.1 -2.1 +0.1 -0.2 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 -0.0 -1.4 -0.6 +0.3 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.5 -1.2 -1.8 +0.8 -0.2
carbon source Dextran 5 mg/ml (C) +0.2 -1.8 -1.0 +0.5 +0.4
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.1 -0.6 -1.2 -0.6 +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse8; day2 -0.1 -0.6 -1.3 +0.6 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 +0.3 -1.7 -0.6 +0.9 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +0.3 -1.6 -0.1 +0.6 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.2 -0.2 -1.2 +0.8 -0.3
carbon source NAG (C) +0.2 +0.3 -1.7 +0.4 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) +0.5 -0.4 -0.7 +0.7 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.5 -0.4 -0.9 +0.7 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +0.6 -1.0 -0.5 +1.3 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.3 -1.1 -0.2 +1.1 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.3 +0.1 -0.8 +0.8 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 +0.3 -1.4 +0.9 +0.8 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.3 -1.2 +1.4 +0.7 -0.7
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.9 -0.7 +0.7 +0.2 -0.3
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.0 +0.9 -1.0 +0.6 +0.5
carbon source D-Galactose 20 mM (C) +0.7 -1.0 +1.3 -0.4 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.5 -0.9 +0.8 +0.6 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.6 -0.6 +0.5 +0.9 -0.1
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.1 +1.2 +1.0 -0.0 -0.4
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.1 +1.5 +0.7 +0.3 -0.2
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